RNA–Protein interactions for RNA: ENST00000597618.5

TRIM28-210, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 609 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-210ENST00000597618 UBE2HP62256 183 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 ADCY2Q08462 1091 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 DMPKQ09013 629 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 NIPAL4Q0D2K0 466 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 ABRQ12979 859 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 LLGL1Q15334 1064 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 RPE65Q16518 533 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 IFI16Q16666 785 aaKnown RBP9.88□□□□□ -0.83
TRIM28-210ENST00000597618 DCAF10Q5QP82 559 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 PRAMEF17Q5VTA0 474 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 CDKAL1Q5VV42 579 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 HGSNATQ68CP4 663 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 GDF7Q7Z4P5 450 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 CUZD1Q86UP6 607 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 AMZ2Q86W34 360 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 ZNF653Q96CK0 615 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 VPS35Q96QK1 796 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 C17orf62Q9BQA9 187 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 SYT11Q9BT88 431 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 DHRS4Q9BTZ2 278 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 TLR10Q9BXR5 811 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 ZNF552Q9H707 407 aaPredicted RBP9.88□□□□□ -0.83
TRIM28-210ENST00000597618 ACTR5Q9H9F9 607 aaPredicted RBP9.88□□□□□ -0.83
TRIM28-210ENST00000597618 SYTL2Q9HCH5 934 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 PCDH18Q9HCL0 1135 aa9.88□□□□□ -0.83
TRIM28-210ENST00000597618 A0A1B0GUH1 482 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 TMEM150CB9EJG8 249 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 PEX12O00623 359 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 E2F3O00716 465 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 SLC4A1P02730 911 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 MTHFD1P11586 935 aaKnown RBP9.87□□□□□ -0.83
TRIM28-210ENST00000597618 TCF4P15884 667 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 CCNCP24863 283 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 PTGER4P35408 488 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 CD86P42081 329 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 GALNT3Q14435 633 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 KRT81Q14533 505 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 PTCHD3Q3KNS1 767 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 KHDC1Q4VXA5 237 aaKnown RBP9.87□□□□□ -0.83
TRIM28-210ENST00000597618 CCDC122Q5T0U0 273 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 KCNMB4Q86W47 210 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 BRSK1Q8TDC3 778 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 COG1Q8WTW3 980 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 TRIM11Q96F44 468 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 TTC25Q96NG3 672 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 TSGA13Q96PP4 275 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 WDR77Q9BQA1 342 aaPredicted RBP9.87□□□□□ -0.83
TRIM28-210ENST00000597618 ZCCHC2Q9C0B9 1178 aaKnown RBP9.87□□□□□ -0.83
TRIM28-210ENST00000597618 XPO4Q9C0E2 1151 aaKnown RBP9.87□□□□□ -0.83
TRIM28-210ENST00000597618 SLC7A5P2Q9GIP4 190 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 CLSTN2Q9H4D0 955 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 MAGEE1Q9HCI5 957 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 MRPL47Q9HD33 250 aaKnown RBP9.87□□□□□ -0.83
TRIM28-210ENST00000597618 IMP3Q9NV31 184 aaKnown RBP9.87□□□□□ -0.83
TRIM28-210ENST00000597618 COPG2Q9UBF2 871 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 SHOC2Q9UQ13 582 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 ZNF711Q9Y462 761 aa9.87□□□□□ -0.83
TRIM28-210ENST00000597618 OR6C74A6NCV1 312 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 LGALS16A8MUM7 142 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 KLF7O75840 302 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-210ENST00000597618 LCA5LO95447 670 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 FTLP02792 175 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-210ENST00000597618 MMP2P08253 660 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 HBQ1P09105 142 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 MSL3P1P0C860 447 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 MYBL1P10243 752 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 BPIP17213 487 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 MX2P20592 715 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 AGXTP21549 392 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 CA5AP35218 305 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 KPNA2P52292 529 aaKnown RBP9.86□□□□□ -0.83
TRIM28-210ENST00000597618 TMEM115Q12893 351 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-210ENST00000597618 PRKAA1Q13131 559 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 XRCC4Q13426 336 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 SSPNQ14714 243 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 PAFAH1B3Q15102 231 aaKnown RBP9.86□□□□□ -0.83
TRIM28-210ENST00000597618 ZNF789Q5FWF6 425 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 NCBP2-AS2Q69YL0 99 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 TXNRD3NBQ6F5E7 133 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 IRF2BP2Q7Z5L9 587 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 TMC3Q7Z5M5 1100 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 ANKRD20A12PQ8NF67 263 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 OR1L3Q8NH93 324 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 GDAP1Q8TB36 358 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 ENOX1Q8TC92 643 aaKnown RBP9.86□□□□□ -0.83
TRIM28-210ENST00000597618 ZFPM2Q8WW38 1151 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 LURAP1Q96LR2 239 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 GPR63Q9BZJ6 419 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 KIR3DX1Q9H7L2 352 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 PSMD13Q9UNM6 376 aa9.86□□□□□ -0.83
TRIM28-210ENST00000597618 NOVA2Q9UNW9 492 aaKnown RBP9.86□□□□□ -0.83
TRIM28-210ENST00000597618 KLF2Q9Y5W3 355 aaPredicted RBP9.86□□□□□ -0.83
TRIM28-210ENST00000597618 PCSK5Q92824 1860 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 A0A1W2PQJ5 194 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 SLC9B1P1A6NJY1 282 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 E7EQ34 232 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 MATN2O00339 956 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 MAP3K7O43318 606 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 LDB2O43679 373 aa9.85□□□□□ -0.83
TRIM28-210ENST00000597618 POP7O75817 140 aaKnown RBP9.85□□□□□ -0.83
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms