RNA–Protein interactions for RNA: ENST00000594243.1

UPF1-202, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 3

Gene UPF1, Length 683 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-202ENST00000594243 SNF8Q96H20 258 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 SIGLEC10Q96LC7 697 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 TSSK1BQ9BXA7 367 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 TMEM121BQ9BXQ6 578 aaPredicted RBP14.73□□□□□ -0.05
UPF1-202ENST00000594243 STRADBQ9C0K7 418 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 EPB41L1Q9H4G0 881 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.73□□□□□ -0.05
UPF1-202ENST00000594243 CDC23Q9UJX2 597 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 ATXN7L1Q9ULK2 861 aaPredicted RBP14.73□□□□□ -0.05
UPF1-202ENST00000594243 PSMD13Q9UNM6 376 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 WDR37Q9Y2I8 494 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 ENTPD2Q9Y5L3 495 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 MAD1L1Q9Y6D9 718 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 RPS6KL1Q9Y6S9 549 aa14.73□□□□□ -0.05
UPF1-202ENST00000594243 OR52A4PA6NMU1 304 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 EFCAB8A8MWE9 144 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 CASC3O15234 703 aaKnown RBP14.72□□□□□ -0.05
UPF1-202ENST00000594243 NDUFS3O75489 264 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 URI1O94763 535 aaPredicted RBP14.72□□□□□ -0.05
UPF1-202ENST00000594243 USP1O94782 785 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 POLBP06746 335 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 SLC35G4P0C7Q5 338 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 INHBCP55103 352 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 CKAP4Q07065 602 aaKnown RBP14.72□□□□□ -0.05
UPF1-202ENST00000594243 RPA4Q13156 261 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 SEMA3AQ14563 771 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 RTP5Q14D33 572 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 MAP9Q49MG5 647 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 DNAJC21Q5F1R6 531 aaKnown RBP14.72□□□□□ -0.05
UPF1-202ENST00000594243 HIBCHQ6NVY1 386 aaPredicted RBP14.72□□□□□ -0.05
UPF1-202ENST00000594243 TMEM26Q6ZUK4 368 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 USP53Q70EK8 1073 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 PDIK1LQ8N165 341 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 OTUD6BQ8N6M0 293 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 ZNF592Q92610 1267 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 NXPE2Q96DL1 559 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 STAMBPL1Q96FJ0 436 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 TCF12Q99081 682 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 TRIM51Q9BSJ1 452 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 NAT9Q9BTE0 207 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 WWP1Q9H0M0 922 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 SLC40A1Q9NP59 571 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 FAM8A1Q9UBU6 413 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 PCDHB1Q9Y5F3 818 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 AK5Q9Y6K8 562 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 PRSS21Q9Y6M0 314 aa14.72□□□□□ -0.05
UPF1-202ENST00000594243 FRYQ5TBA9 3013 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 LILRA5A6NI73 299 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 PRMT5O14744 637 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 LIN7AO14910 233 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 DUX1O43812 170 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 OR1I1O60431 355 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 PROS1P07225 676 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 ARNTP27540 789 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 CCKBRP32239 447 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 ARCN1P48444 511 aaKnown RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 CD151P48509 253 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 PLOD1Q02809 727 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 ZFP36L1Q07352 338 aaKnown RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 TUBB2AQ13885 445 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 RPE65Q16518 533 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 RNF187Q5TA31 235 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 NKAIN2Q5VXU1 208 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 CAPRIN2Q6IMN6 1127 aaKnown RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 TMEM71Q6P5X7 295 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 ZNF572Q7Z3I7 529 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 LDB1Q86U70 411 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 LRRC6Q86X45 466 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 ZNF761Q86XN6 746 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 LMNTD2Q8IXW0 634 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 LSMEM2Q8N112 164 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 GPR150Q8NGU9 434 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 ZFPM2Q8WW38 1151 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 TMEM159Q96B96 161 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 ZNF669Q96BR6 464 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 ATXN7L3BQ96GX2 97 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 FCRL3Q96P31 734 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 INSM2Q96T92 566 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 ERP44Q9BS26 406 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 TUBB2BQ9BVA1 445 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 CARD6Q9BX69 1037 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 TRIM31Q9BZY9 425 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 CCDC86Q9H6F5 360 aaKnown RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 COG4Q9H9E3 785 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 RDH14Q9HBH5 336 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 EPB41L5Q9HCM4 733 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 MARCH4Q9P2E8 410 aaPredicted RBP14.71□□□□□ -0.05
UPF1-202ENST00000594243 HEBP2Q9Y5Z4 205 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 COLEC10Q9Y6Z7 277 aa14.71□□□□□ -0.05
UPF1-202ENST00000594243 CCDC187A0A096LP49 1063 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 IFRD1O00458 451 aaPredicted RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 SEC31AO94979 1220 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 TTC4O95801 387 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 MTHFD1P11586 935 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 OGNP20774 298 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 NDUFS1P28331 727 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 PDX1P52945 283 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 ITGA8P53708 1063 aa14.7□□□□□ -0.06
UPF1-202ENST00000594243 DHX9Q08211 1270 aaKnown RBP14.7□□□□□ -0.06
UPF1-202ENST00000594243 C2orf54Q08AI8 447 aa14.7□□□□□ -0.06
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms