RNA–Protein interactions for RNA: ENST00000594090.5

VRK3-206, Transcript of vaccinia related kinase 3, humanhuman

TSL 1 (best)

Gene VRK3, Length 1,448 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-206ENST00000594090 SAMD15Q9P1V8 674 aa14.27□□□□□ -0.12
VRK3-206ENST00000594090 DKK4Q9UBT3 224 aa14.27□□□□□ -0.12
VRK3-206ENST00000594090 ANAPC5Q9UJX4 755 aa14.27□□□□□ -0.12
VRK3-206ENST00000594090 ACSL5Q9ULC5 683 aa14.27□□□□□ -0.12
VRK3-206ENST00000594090 AKAP13Q12802 2813 aa14.27□□□□□ -0.12
VRK3-206ENST00000594090 A0A1W2PNU3 283 aaPredicted RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 LILRA5A6NI73 299 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 SDR42E2A6NKP2 422 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 CD3EAPO15446 510 aaKnown RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 DUX1O43812 170 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 OR1I1O60431 355 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 GSTM1P09488 218 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 SLC35G4P0C7Q5 338 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 PPARGP37231 505 aaPredicted RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 GABREP78334 506 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 GSTM4Q03013 218 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 ZFP36L1Q07352 338 aaKnown RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 CYP4F3Q08477 520 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 SQSTM1Q13501 440 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 RPE65Q16518 533 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 C3orf38Q5JPI3 329 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 IZUMO3Q5VZ72 239 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 KIAA0930Q6ICG6 404 aaPredicted RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 TMEM26Q6ZUK4 368 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 USP53Q70EK8 1073 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 LDB1Q86U70 411 aaPredicted RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 PIM3Q86V86 326 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 HOOK3Q86VS8 718 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 CFAP206Q8IYR0 622 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 AGGF1Q8N302 714 aaeCLIP14.26□□□□□ -0.13
VRK3-206ENST00000594090 GPR150Q8NGU9 434 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 AHCYL2Q96HN2 611 aaKnown RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 KRT12Q99456 494 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 TRIM56Q9BRZ2 755 aaKnown RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 TBC1D10AQ9BXI6 508 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 WWP1Q9H0M0 922 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 EPB41L5Q9HCM4 733 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.26□□□□□ -0.13
VRK3-206ENST00000594090 SATB2Q9UPW6 733 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 AK5Q9Y6K8 562 aa14.26□□□□□ -0.13
VRK3-206ENST00000594090 PRAMEF33A0A0G2JMD5 474 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 FAM237BA0A1B0GVD1 139 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 VAPBO95292 243 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 FTH1P02794 183 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 MPOP05164 745 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 OR56A5P0C7T3 313 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 MTHFD1P11586 935 aaKnown RBP14.25□□□□□ -0.13
VRK3-206ENST00000594090 PAMP19021 973 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 PPM1FP49593 454 aaPredicted RBP14.25□□□□□ -0.13
VRK3-206ENST00000594090 TTPAP49638 278 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 CFHR1Q03591 330 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 ZNF574Q6ZN55 896 aaPredicted RBP14.25□□□□□ -0.13
VRK3-206ENST00000594090 RBM12BQ8IXT5 1001 aaKnown RBP14.25□□□□□ -0.13
VRK3-206ENST00000594090 OTUD6BQ8N6M0 293 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 SPATA4Q8NEY3 305 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 SPDYE1Q8NFV5 336 aaPredicted RBP14.25□□□□□ -0.13
VRK3-206ENST00000594090 OR4D9Q8NGE8 314 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 ZNF669Q96BR6 464 aaPredicted RBP14.25□□□□□ -0.13
VRK3-206ENST00000594090 RMDN2Q96LZ7 410 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 DPYSL5Q9BPU6 564 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 STRADBQ9C0K7 418 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 ZMYND15Q9H091 742 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 SEMA6CQ9H3T2 930 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 EPB41L1Q9H4G0 881 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 POLR1BQ9H9Y6 1135 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 SLC40A1Q9NP59 571 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 CFAP20Q9Y6A4 193 aaKnown RBP14.25□□□□□ -0.13
VRK3-206ENST00000594090 PIKFYVEQ9Y2I7 2098 aa14.25□□□□□ -0.13
VRK3-206ENST00000594090 CCDC187A0A096LP49 1063 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 IGHV5-10-1A0A0J9YXX1 117 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 MAGEB16A2A368 324 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 TMX2-CTNND1H3BSU7 103 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 BRINP1O60477 761 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 POLBP06746 335 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 HOXB3P14651 431 aaPredicted RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 MAPK9P45984 424 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 ARCN1P48444 511 aaKnown RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 LSSP48449 732 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 C2orf54Q08AI8 447 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 RPA4Q13156 261 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 GPR18Q14330 331 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 MORF4L2Q15014 288 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 ST3GAL2Q16842 350 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 ANKRD20A4Q4UJ75 823 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 PHF19Q5T6S3 580 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 DUS1LQ6P1R4 473 aaKnown RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 TMEM135Q86UB9 458 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 WDR36Q8NI36 951 aaKnown RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 SIGLEC10Q96LC7 697 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 CCDC74BQ96LY2 380 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 C12orf66Q96MD2 445 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 FCRL3Q96P31 734 aaPredicted RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 INSM2Q96T92 566 aaPredicted RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 OR52A5Q9H2C5 316 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 IMP3Q9NV31 184 aaKnown RBP14.24□□□□□ -0.13
VRK3-206ENST00000594090 TMEM9Q9P0T7 183 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 PCDHGA8Q9Y5G5 932 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 MAD1L1Q9Y6D9 718 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 RPS6KL1Q9Y6S9 549 aa14.24□□□□□ -0.13
VRK3-206ENST00000594090 UNC13CQ8NB66 2214 aa14.24□□□□□ -0.13
Retrieved 100 of 20,778 RNA–protein pairs in 23.7 ms