RNA–Protein interactions for RNA: ENST00000570062.1

VPS39-213, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 842 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-213ENST00000570062 A8MT66 165 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 SUPT3HB4E1H0 165 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 MATN2O00339 956 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 TOR1BO14657 336 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 SPINT1O43278 529 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 MBTPS2O43462 519 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ZBTB14O43829 449 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 NUAK1O60285 661 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 OR1I1O60431 355 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ATG13O75143 517 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 NIPSNAP2O75323 286 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 KATNA1O75449 491 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 SUPT3HO75486 399 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 TM7SF2O76062 418 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 SUPT7LO94864 414 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 TRIM16O95361 564 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 SERPINA6P08185 405 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ANXA5P08758 320 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 SBK3P0C264 359 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 UGT1A6P19224 532 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 CYP2A7P20853 494 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 UGT1A1P22309 533 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 UGT1A4P22310 534 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 UGT1A3P35503 534 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 UGT1A5P35504 534 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 KIR2DL1P43626 348 aaPredicted RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 GPR1P46091 355 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 GSK3AP49840 483 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 CDKN1CP49918 316 aaPredicted RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 PKNOX1P55347 436 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 RPS21P63220 83 aaKnown RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 TIAL1Q01085 375 aaKnown RBP eCLIP7.85□□□□□ -1.15
VPS39-213ENST00000570062 DLX2Q07687 328 aaPredicted RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 RALGDSQ12967 914 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 BNIP1Q12981 228 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ZNF460Q14592 562 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 BCL7AQ4VC05 210 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ARL13AQ5H913 290 aaPredicted RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 TMEM196Q5HYL7 178 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ZNF678Q5SXM1 525 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 CGB2Q6NT52 195 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 TMEM207Q6UWW9 146 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ADAMTSL4Q6UY14 1074 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 FRMD7Q6ZUT3 714 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 Q6ZVL8 140 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 HSD11B1LQ7Z5J1 315 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 MMAAQ8IVH4 418 aaKnown RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 SLC44A3Q8N4M1 653 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 SIDT2Q8NBJ9 832 aaKnown RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 MAGEC3Q8TD91 643 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ATL1Q8WXF7 558 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 FUBP1Q96AE4 644 aaKnown RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 LINC00615Q96LM1 132 aaPredicted RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 ATOH8Q96SQ7 321 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 NELL2Q99435 816 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 ARHGAP9Q9BRR9 750 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 CCM2Q9BSQ5 444 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 RIOK2Q9BVS4 552 aaKnown RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 UBE2ZQ9H832 354 aaPredicted RBP7.85□□□□□ -1.15
VPS39-213ENST00000570062 RMI1Q9H9A7 625 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 KCNK12Q9HB15 430 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 PREBQ9HCU5 417 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 SLC2A4RGQ9NR83 387 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 DCTN4Q9UJW0 460 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 OARD1Q9Y530 152 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 FADS3Q9Y5Q0 445 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 PIAS3Q9Y6X2 628 aa7.85□□□□□ -1.15
VPS39-213ENST00000570062 A8MX80 341 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 K7EQS6 105 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 LIN7AO14910 233 aaPredicted RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 HGSO14964 777 aaPredicted RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 RECQL5O94762 991 aaPredicted RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 TSPAN12O95859 305 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 ACADMP11310 421 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 C6P13671 934 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CALB2P22676 271 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 MAP4P27816 1152 aaKnown RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 AOAHP28039 575 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 PRDX6P30041 224 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 NUDT1P36639 197 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 ETV3P41162 512 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 P2RY2P41231 377 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 PSMD8P48556 350 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CORO7P57737 925 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 OVGP1Q12889 678 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 TMEM115Q12893 351 aaPredicted RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 LCP2Q13094 533 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 RPA4Q13156 261 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 SGCGQ13326 291 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 TDGQ13569 410 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 SUZ12Q15022 739 aaKnown RBP7.84□□□□□ -1.15
VPS39-213ENST00000570062 PCBP2Q15366 365 aaKnown RBP eCLIP7.84□□□□□ -1.15
VPS39-213ENST00000570062 AAK1Q2M2I8 961 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 LEXMQ3ZCV2 418 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 GALNTL6Q49A17 601 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 EGFLAMQ63HQ2 1017 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 EPGNQ6UW88 154 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 ZCCHC23Q6ZST2 131 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 PIM3Q86V86 326 aa7.84□□□□□ -1.15
VPS39-213ENST00000570062 CPNE9Q8IYJ1 553 aa7.84□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.7 ms