RNA–Protein interactions for RNA: ENST00000569950.1

VPS35-211, Transcript of VPS35, retromer complex component, humanhuman

TSL 5

Gene VPS35, Length 1,096 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35-211ENST00000569950 TMEM207Q6UWW9 146 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 CHST15Q7LFX5 561 aaPredicted RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 STRA8Q7Z7C7 330 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 PIP4P1Q86T03 277 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 PIM3Q86V86 326 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 LRRC6Q86X45 466 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 TRAPPC5Q8IUR0 188 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 CEP97Q8IW35 865 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 NAGSQ8N159 534 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 OR2L2Q8NH16 312 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 CD200R1Q8TD46 325 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 CALML6Q8TD86 181 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 MZB1Q8WU39 189 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 SLC44A1Q8WWI5 657 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 VPS39Q96JC1 886 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 ZNF514Q96K75 400 aaPredicted RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 RMDN2Q96LZ7 410 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 TTC25Q96NG3 672 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 NDNQ99608 321 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 RBBP8Q99708 897 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 AARSD1Q9BTE6 412 aaKnown RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 GTPBP2Q9BX10 602 aaKnown RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 OR52A5Q9H2C5 316 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 RHOJQ9H4E5 214 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 COG4Q9H9E3 785 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 VPS37BQ9H9H4 285 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 KLC4Q9NSK0 619 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 TAAR2Q9P1P5 351 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 ZFATQ9P243 1243 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 MTO1Q9Y2Z2 717 aaKnown RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 PCDHGB2Q9Y5G2 931 aa9.12□□□□□ -0.95
VPS35-211ENST00000569950 DNMT3AQ9Y6K1 912 aaPredicted RBP9.12□□□□□ -0.95
VPS35-211ENST00000569950 CEP295Q9C0D2 2601 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 PRAMEF33A0A0G2JMD5 474 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 C17orf113A0A1B0GUU1 675 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 UBA6A0AVT1 1052 aaPredicted RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 C4orf47A7E2U8 309 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 DFNA5O60443 496 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 NDUFS3O75489 264 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 SLCO2B1O94956 709 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 ESR1P03372 595 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 TPBGLP0DKB5 382 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 MYF5P13349 255 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 H2AFXP16104 143 aaPredicted RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 ITGB6P18564 788 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 ACADLP28330 430 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 STX2P32856 288 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 MAGEA12P43365 314 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 PREPP48147 710 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 CD151P48509 253 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 ARRB1P49407 418 aaPredicted RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 LIMK1P53667 647 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 LIMK2P53671 638 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 CSE1LP55060 971 aaKnown RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 TAS2R39P59534 338 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 CLCA4Q14CN2 919 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 ZKSCAN8Q15776 578 aaPredicted RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 DEFB133Q30KQ1 61 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 BEND6Q5SZJ8 279 aaPredicted RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 STPG1Q5TH74 334 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 CAPRIN2Q6IMN6 1127 aaKnown RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 SLC30A9Q6PML9 568 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 ABRAXAS1Q6UWZ7 409 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 WASH2PQ6VEQ5 465 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 CEP128Q6ZU80 1094 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 SDCCAG8Q86SQ7 713 aaPredicted RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 AMZ2Q86W34 360 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 SLC35F3Q8IY50 421 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 FSTL5Q8N475 847 aaPredicted RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 PPM1NQ8N819 430 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 GPR156Q8NFN8 814 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 OR4C6Q8NH72 309 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 HM13Q8TCT9 377 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 LMX1AQ8TE12 382 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 TBRG4Q969Z0 631 aaKnown RBP eCLIP9.11□□□□□ -0.95
VPS35-211ENST00000569950 ISL2Q96A47 359 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 SKA1Q96BD8 255 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 FAM136AQ96C01 138 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 DCUN1D1Q96GG9 259 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 CYTH2Q99418 400 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 GPR22Q99680 433 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 NRTNQ99748 197 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 CPNE1Q99829 537 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 CCM2Q9BSQ5 444 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 SLC13A1Q9BZW2 595 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 ZCCHC2Q9C0B9 1178 aaKnown RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 TWSG1Q9GZX9 223 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 TMEM9BQ9NQ34 198 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 WASH6PQ9NQA3 447 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 PRDM8Q9NQV8 689 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 ZNF624Q9P2J8 865 aaPredicted RBP9.11□□□□□ -0.95
VPS35-211ENST00000569950 SPASTQ9UBP0 616 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 MOSPD1Q9UJG1 213 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 IKZF3Q9UKT9 509 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 DNAJC16Q9Y2G8 782 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 GPSM3Q9Y4H4 160 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 PCDHB1Q9Y5F3 818 aa9.11□□□□□ -0.95
VPS35-211ENST00000569950 A0A087WUV0 522 aaPredicted RBP9.1□□□□□ -0.95
VPS35-211ENST00000569950 CCDC151A5D8V7 595 aa9.1□□□□□ -0.95
VPS35-211ENST00000569950 CFAP99D6REC4 459 aa9.1□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 24.2 ms