RNA–Protein interactions for RNA: ENST00000567963.6

CLN3-229, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,452 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-229ENST00000567963 COL12A1Q99715 3063 aa15.73■□□□□ 0.11
CLN3-229ENST00000567963 C5orf60A6NFR6 353 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 MGAT4DA6NG13 374 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 C2orf81A6NN90 581 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 UBR5O95071 2799 aaPredicted RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 AKT1P31749 480 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 CTNNA1P35221 906 aaKnown RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 ADRA1AP35348 466 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 CYLC1P35663 651 aaPredicted RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 OTUD4Q01804 1114 aaKnown RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 TLE1Q04724 770 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 CCDC181Q5TID7 509 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 ITPRIPL1Q6GPH6 555 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 CYB5D1Q6P9G0 228 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 DET1Q7L5Y6 550 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 OR4K2Q8NGD2 314 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 ACTL9Q8TC94 416 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 ABHD17AQ96GS6 310 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 FERMT1Q9BQL6 677 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 ASB8Q9H765 288 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 PDE7BQ9NP56 450 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 LUC7LQ9NQ29 371 aaKnown RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 ZNF71Q9NQZ8 489 aaPredicted RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 LNPEPQ9UIQ6 1025 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 AAR2Q9Y312 384 aaKnown RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 PCDHA3Q9Y5H8 950 aa15.72■□□□□ 0.11
CLN3-229ENST00000567963 CFAP20Q9Y6A4 193 aaKnown RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 SPENQ96T58 3664 aaKnown RBP15.72■□□□□ 0.11
CLN3-229ENST00000567963 SRP72O76094 671 aaKnown RBP15.71■□□□□ 0.11
CLN3-229ENST00000567963 CCNYL3P0C7X3 344 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 MTHFD1P11586 935 aaKnown RBP15.71■□□□□ 0.11
CLN3-229ENST00000567963 FOLR1P15328 257 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 PBLDP30039 288 aaPredicted RBP15.71■□□□□ 0.11
CLN3-229ENST00000567963 MSLNQ13421 630 aaPredicted RBP15.71■□□□□ 0.11
CLN3-229ENST00000567963 OLIG2Q13516 323 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 ERV3-1Q14264 604 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 PLCL1Q15111 1095 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 ANKRD20A2Q5SQ80 823 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 ANKRD20A1Q5TYW2 823 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 ANKRD20A3Q5VUR7 823 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 SIDT2Q8NBJ9 832 aaKnown RBP15.71■□□□□ 0.11
CLN3-229ENST00000567963 OR2L2Q8NH16 312 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 C9orf43Q8TAL5 461 aaPredicted RBP15.71■□□□□ 0.11
CLN3-229ENST00000567963 INSM2Q96T92 566 aaPredicted RBP15.71■□□□□ 0.11
CLN3-229ENST00000567963 MAP3K3Q99759 626 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 IMP3Q9NV31 184 aaKnown RBP15.71■□□□□ 0.11
CLN3-229ENST00000567963 KCND3Q9UK17 655 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 ACSL5Q9ULC5 683 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 PADI1Q9ULC6 663 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 KCTD3Q9Y597 815 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 RELNP78509 3460 aa15.71■□□□□ 0.11
CLN3-229ENST00000567963 KLHL33A6NCF5 533 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 RCCD1A6NED2 376 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 OR5K3A6NET4 321 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 AGAP14A8MT82 685 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 TIAF1O95411 115 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 MT-ND3P03897 115 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 PSMB4P28070 264 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 XIAPP98170 497 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 TUBB3Q13509 450 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 SEPT6Q14141 434 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 KCNAB1Q14722 419 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 SKIDA1Q1XH10 827 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 BPHLQ86WA6 291 aaPredicted RBP15.71■□□□□ 0.1
CLN3-229ENST00000567963 NAT14Q8WUY8 206 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 ZFPM2Q8WW38 1151 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 CALR3Q96L12 384 aaKnown RBP15.71■□□□□ 0.1
CLN3-229ENST00000567963 LINC00615Q96LM1 132 aaPredicted RBP15.71■□□□□ 0.1
CLN3-229ENST00000567963 FCRL4Q96PJ5 515 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 APOL2Q9BQE5 337 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 OSBPL8Q9BZF1 889 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 WWP1Q9H0M0 922 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 LHX9Q9NQ69 397 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 HRASLS2Q9NWW9 162 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 FKBPLQ9UIM3 349 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 ANAPC2Q9UJX6 822 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 RARRES3Q9UL19 164 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 PCDHGA6Q9Y5G7 932 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 KCNMB2Q9Y691 235 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 EPN1Q9Y6I3 576 aaPredicted RBP15.71■□□□□ 0.1
CLN3-229ENST00000567963 DUSP10Q9Y6W6 482 aa15.71■□□□□ 0.1
CLN3-229ENST00000567963 SGTAO43765 313 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 KATNA1O75449 491 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 FURINP09958 794 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 RBP3P10745 1247 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 CTNNA2P26232 953 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 PTPN7P35236 360 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 EIF3EP60228 445 aaKnown RBP15.7■□□□□ 0.1
CLN3-229ENST00000567963 PDE1BQ01064 536 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 PRPSAP1Q14558 356 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 BCL7AQ4VC05 210 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 PWWP2BQ6NUJ5 590 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 KMT5CQ86Y97 462 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 CDKL3Q8IVW4 592 aaPredicted RBP15.7■□□□□ 0.1
CLN3-229ENST00000567963 SPDYE1Q8NFV5 336 aaPredicted RBP15.7■□□□□ 0.1
CLN3-229ENST00000567963 OR13C4Q8NGS5 318 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 C12orf66Q96MD2 445 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 CD180Q99467 661 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 EPN3Q9H201 632 aa15.7■□□□□ 0.1
CLN3-229ENST00000567963 UBA6A0AVT1 1052 aaPredicted RBP15.69■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms