RNA–Protein interactions for RNA: ENST00000566824.6

CLN3-225, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,326 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-225ENST00000566824 CFAP206Q8IYR0 622 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 ZBED8Q8IZ13 594 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 Q8N9G6 341 aaPredicted RBP19.18■□□□□ 0.66
CLN3-225ENST00000566824 SPDYE1Q8NFV5 336 aaPredicted RBP19.18■□□□□ 0.66
CLN3-225ENST00000566824 WWP1Q9H0M0 922 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 FBXO6Q9NRD1 293 aaPredicted RBP19.18■□□□□ 0.66
CLN3-225ENST00000566824 IARS2Q9NSE4 1012 aaKnown RBP19.18■□□□□ 0.66
CLN3-225ENST00000566824 LRIT1Q9P2V4 623 aa19.18■□□□□ 0.66
CLN3-225ENST00000566824 NDUFS3O75489 264 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 SPINK2P20155 84 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 IDSP22304 550 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 PMLP29590 882 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 PDHA2P29803 388 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 SLC19A1P41440 591 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 PREPP48147 710 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 MPP1Q00013 466 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 THOC5Q13769 683 aaKnown RBP19.17■□□□□ 0.66
CLN3-225ENST00000566824 CHCHD2P9Q5T1J5 151 aaPredicted RBP19.17■□□□□ 0.66
CLN3-225ENST00000566824 AGAP9Q5VTM2 703 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 MRNIPQ6NTE8 343 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 ABRAXAS1Q6UWZ7 409 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 RAB44Q7Z6P3 723 aaPredicted RBP19.17■□□□□ 0.66
CLN3-225ENST00000566824 KCNMB4Q86W47 210 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 ADAMTS14Q8WXS8 1223 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 LRRC39Q96DD0 335 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 BIRC8Q96P09 236 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 CCDC3Q9BQI4 270 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 NCKIPSDQ9NZQ3 722 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 WASF3Q9UPY6 502 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 CRYL1Q9Y2S2 319 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 PCDHGA1Q9Y5H4 931 aa19.17■□□□□ 0.66
CLN3-225ENST00000566824 UBA6A0AVT1 1052 aaPredicted RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 PRMT5O14744 637 aaPredicted RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 B4GAT1O43505 415 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 HYAL3O43820 417 aaPredicted RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 OPA1O60313 960 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 GLB1P16278 677 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 VCLP18206 1134 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 OGNP20774 298 aaKnown RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 FMO4P31512 558 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 CCR7P32248 378 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 ABCG1P45844 678 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 EIF3BP55884 814 aaKnown RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 UBE2IP63279 158 aaKnown RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 INSM1Q01101 510 aaPredicted RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 FOXC1Q12948 553 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 BRD3Q15059 726 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 UBAP2Q5T6F2 1119 aaKnown RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 DUS1LQ6P1R4 473 aaKnown RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 WASH2PQ6VEQ5 465 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 CAPN12Q6ZSI9 719 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 SDCCAG8Q86SQ7 713 aaPredicted RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 CCDC25Q86WR0 208 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 HM13Q8TCT9 377 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 MAPK15Q8TD08 544 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 RMDN2Q96LZ7 410 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 INSM2Q96T92 566 aaPredicted RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 TTC1Q99614 292 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 NAT9Q9BTE0 207 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 COG4Q9H9E3 785 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 WASH6PQ9NQA3 447 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 GALPQ9UBC7 116 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 CFAP20Q9Y6A4 193 aaKnown RBP19.16■□□□□ 0.66
CLN3-225ENST00000566824 CEP295Q9C0D2 2601 aa19.16■□□□□ 0.66
CLN3-225ENST00000566824 NDC80O14777 642 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 KCNJ13O60928 360 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 PIAS1O75925 651 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 TTC4O95801 387 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 OR56A5P0C7T3 313 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 GABRB3P28472 473 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 ECHS1P30084 290 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 CARSP49589 748 aaKnown RBP19.15■□□□□ 0.66
CLN3-225ENST00000566824 CSE1LP55060 971 aaKnown RBP19.15■□□□□ 0.66
CLN3-225ENST00000566824 OR1D5P58170 312 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 CCL7P80098 99 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 CAV1Q03135 178 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 RPE65Q16518 533 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 GLE1Q53GS7 698 aaKnown RBP19.15■□□□□ 0.66
CLN3-225ENST00000566824 ZNF549Q6P9A3 640 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 ZNF438Q7Z4V0 828 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 IFT81Q8WYA0 676 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 ELMO1Q92556 727 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 CERS2Q96G23 380 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 TCF12Q99081 682 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 CPNE7Q9UBL6 633 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 FBXO5Q9UKT4 447 aa19.15■□□□□ 0.66
CLN3-225ENST00000566824 C17orf113A0A1B0GUU1 675 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 A0A1W2PQM1 296 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 FAM149AA5PLN7 773 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 NUDT21O43809 227 aaKnown RBP19.14■□□□□ 0.65
CLN3-225ENST00000566824 NIPSNAP2O75323 286 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 HAUS5O94927 633 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 TRIM16O95361 564 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 GP1BAP07359 652 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 ADRB1P08588 477 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 RHOXF2BP0C7M4 288 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 RPS3P23396 243 aaKnown RBP eCLIP19.14■□□□□ 0.654e-6■■□□□ 12.9
CLN3-225ENST00000566824 SSTR1P30872 391 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 FASLGP48023 281 aa19.14■□□□□ 0.65
CLN3-225ENST00000566824 GPX6P59796 221 aa19.14■□□□□ 0.65
Retrieved 100 of 20,778 RNA–protein pairs in 28.7 ms