RNA–Protein interactions for RNA: ENST00000565316.6

CLN3-216, Transcript of CLN3, battenin, humanhuman

TSL 1 (best) BASIC

Gene CLN3, Length 1,318 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-216ENST00000565316 RSPH14Q9UHP6 348 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 LNPEPQ9UIQ6 1025 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 PSMD13Q9UNM6 376 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 RELNP78509 3460 aa16.74■□□□□ 0.27
CLN3-216ENST00000565316 KLHL33A6NCF5 533 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 MGAT4DA6NG13 374 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 APOC4-APOC2K7ER74 178 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 STX7O15400 261 aaKnown RBP16.73■□□□□ 0.27
CLN3-216ENST00000565316 TIAF1O95411 115 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 APOC2P02655 101 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 FURINP09958 794 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 CCNYL3P0C7X3 344 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 ADRA1AP35348 466 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 TUBB3Q13509 450 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 PTPRCAPQ14761 206 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 LACTB2Q53H82 288 aaPredicted RBP16.73■□□□□ 0.27
CLN3-216ENST00000565316 FNBP1LQ5T0N5 605 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 RANBP10Q6VN20 620 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 TC2NQ8N9U0 490 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 SIDT2Q8NBJ9 832 aaKnown RBP16.73■□□□□ 0.27
CLN3-216ENST00000565316 KRT35Q92764 455 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 INSM2Q96T92 566 aaPredicted RBP16.73■□□□□ 0.27
CLN3-216ENST00000565316 CD180Q99467 661 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 FSD1LQ9BXM9 530 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 LHX9Q9NQ69 397 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 RARRES3Q9UL19 164 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 ACSL5Q9ULC5 683 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 POLHQ9Y253 713 aa16.73■□□□□ 0.27
CLN3-216ENST00000565316 SBDSQ9Y3A5 250 aaKnown RBP eCLIP16.73■□□□□ 0.27
CLN3-216ENST00000565316 OR5K3A6NET4 321 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 AGAP14A8MT82 685 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 C21orf140B9A014 251 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 SGTAO43765 313 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 CREG1O75629 220 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 ANXA9O76027 345 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 PRAMEF1O95521 474 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 MSH3P20585 1137 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 LPOP22079 712 aaPredicted RBP16.72■□□□□ 0.27
CLN3-216ENST00000565316 RBL1P28749 1068 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 GEMP55040 296 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 COPS2P61201 443 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 ACY1Q03154 408 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 MSLNQ13421 630 aaPredicted RBP16.72■□□□□ 0.27
CLN3-216ENST00000565316 DNASE1L3Q13609 305 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 ERV3-1Q14264 604 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 KCNAB1Q14722 419 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 TAF1AQ15573 450 aaPredicted RBP16.72■□□□□ 0.27
CLN3-216ENST00000565316 BCL7AQ4VC05 210 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 COLEC12Q5KU26 742 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 PWWP2BQ6NUJ5 590 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 CCDC50Q8IVM0 306 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 D2HGDHQ8N465 521 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 BEND7Q8N7W2 519 aaPredicted RBP16.72■□□□□ 0.27
CLN3-216ENST00000565316 RNF214Q8ND24 703 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 OR2L2Q8NH16 312 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 CT55Q8WUE5 264 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 LINC00615Q96LM1 132 aaPredicted RBP16.72■□□□□ 0.27
CLN3-216ENST00000565316 MAP3K3Q99759 626 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 HEMGNQ9BXL5 484 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 EFR3BQ9Y2G0 817 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 PCDHA13Q9Y5I0 950 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 ARL5AQ9Y689 179 aa16.72■□□□□ 0.27
CLN3-216ENST00000565316 SPENQ96T58 3664 aaKnown RBP16.72■□□□□ 0.27
CLN3-216ENST00000565316 C5orf60A6NFR6 353 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 TLCD2A6NGC4 264 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 C2orf81A6NN90 581 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 KATNA1O75449 491 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 EBLN1P0CF75 366 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 PYGMP11217 842 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 AKT1P31749 480 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 HSD11B2P80365 405 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 XIAPP98170 497 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 PLCL1Q15111 1095 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 DNTTIP2Q5QJE6 756 aaKnown RBP16.71■□□□□ 0.27
CLN3-216ENST00000565316 ITPRIPL1Q6GPH6 555 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 TCTN3Q6NUS6 607 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 CERS6Q6ZMG9 384 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 CCDC170Q8IYT3 715 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 CARFQ8N187 725 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 OR4K2Q8NGD2 314 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 C19orf43Q9BQ61 176 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 FICDQ9BVA6 458 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 WWP1Q9H0M0 922 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 C10orf88Q9H8K7 445 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 IMP3Q9NV31 184 aaKnown RBP16.71■□□□□ 0.27
CLN3-216ENST00000565316 HRASLS2Q9NWW9 162 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 SLC24A2Q9UI40 661 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 TFR2Q9UP52 801 aa16.71■□□□□ 0.27
CLN3-216ENST00000565316 USP9XQ93008 2570 aaPredicted RBP16.71■□□□□ 0.27
CLN3-216ENST00000565316 USP9YO00507 2555 aaPredicted RBP16.71■□□□□ 0.27
CLN3-216ENST00000565316 PIPSLA2A3N6 862 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 MKRN2OSH3BPM6 223 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 H7C0C1 242 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 SRP72O76094 671 aaKnown RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 PBLDP30039 288 aaPredicted RBP16.7■□□□□ 0.26
CLN3-216ENST00000565316 PTPN7P35236 360 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 ATP5OP48047 213 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 PMS2P54278 862 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 IGFBP7Q16270 282 aa16.7■□□□□ 0.26
CLN3-216ENST00000565316 SARM1Q6SZW1 724 aa16.7■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 20 ms