RNA–Protein interactions for RNA: ENST00000564593.1

LINC00560-201, long intergenic non-protein coding RNA 560, humanhuman

TSL 1 (best) BASIC

Gene LINC00560, Length 1,599 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00560-201ENST00000564593 TO15178 435 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 ZNHIT1O43257 154 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 LDB3O75112 727 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 BMP10O95393 424 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 NTN1O95631 604 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 FAM106CPP0CH98 169 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 ITGA2P17301 1181 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 EEF1A1P68104 462 aaKnown RBP4.53□□□□□ -1.69
LINC00560-201ENST00000564593 IRX6P78412 446 aaPredicted RBP4.53□□□□□ -1.69
LINC00560-201ENST00000564593 CDK3Q00526 305 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 RELQ04864 619 aaPredicted RBP4.53□□□□□ -1.69
LINC00560-201ENST00000564593 KIF5AQ12840 1032 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 RALGDSQ12967 914 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 SNTA1Q13424 505 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 CAMK2DQ13557 499 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 GTF2H2Q13888 395 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 EEF1A1P5Q5VTE0 462 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 CST9LP1Q5W188 147 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 OR7E24Q6IFN5 339 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 GTF2H2CQ6P1K8 395 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 CHST3Q7LGC8 479 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 BHLHA9Q7RTU4 235 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 KRT77Q7Z794 578 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 GBGT1Q8N5D6 347 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 KCNH5Q8NCM2 988 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 TMEM255BQ8WV15 326 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 ZFAND2BQ8WV99 257 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 NXNL1Q96CM4 212 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 BICD1Q96G01 975 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 CFAP57Q96MR6 1250 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 MS4A10Q96PG2 267 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 NEURL2Q9BR09 285 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 MOV10L1Q9BXT6 1211 aaKnown RBP4.53□□□□□ -1.69
LINC00560-201ENST00000564593 CSTL1Q9H114 145 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 HHATLQ9HCP6 504 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 IL17BQ9UHF5 180 aa4.53□□□□□ -1.69
LINC00560-201ENST00000564593 MAGEA13PA6NCF6 341 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 C15orf62A8K5M9 175 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 SMAD6O43541 496 aaKnown RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 XRCC3O43542 346 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 SPRY1O43609 319 aaPredicted RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 BUD23O43709 281 aaKnown RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 TSPAN1O60635 241 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 PAPSS2O95340 614 aaPredicted RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 ZBTB11O95625 1053 aaPredicted RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 CCDC175P0C221 793 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 SNHG28P0DPA3 235 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 ITGB6P18564 788 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 RUNX1T1Q06455 604 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 PLA2G7Q13093 441 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 NR1D2Q14995 579 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 KRBOX4Q5JUW0 171 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 GCNT6Q5T4J0 391 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 FAM109BQ6ICB4 259 aaPredicted RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 RBPMS2Q6ZRY4 209 aaKnown RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 ASB18Q6ZVZ8 466 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 PLEKHM3Q6ZWE6 761 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 CCDC186Q7Z3E2 898 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 SLFN11Q7Z7L1 901 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 VSIG1Q86XK7 387 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 KMT5CQ86Y97 462 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 ZNF441Q8N8Z8 693 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 EXD1Q8NHP7 514 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 BBS10Q8TAM1 723 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 MRPS27Q92552 414 aaKnown RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 MED30Q96HR3 178 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 LYZL4Q96KX0 146 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 LINC00615Q96LM1 132 aaPredicted RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 ZNF582Q96NG8 517 aaPredicted RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 OLFM1Q99784 485 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 C16orf70Q9BSU1 422 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 OPA3Q9H6K4 179 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 EQTNQ9NQ60 294 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 PIH1D3Q9NQM4 214 aaKnown RBP4.52□□□□□ -1.69
LINC00560-201ENST00000564593 NACADO15069 1562 aa4.52□□□□□ -1.69
LINC00560-201ENST00000564593 ZCWPW2A0A1B0GU75 182 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 C4orf47A7E2U8 309 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 HEPACAM2A8MVW5 462 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 EIF3DO15371 548 aaKnown RBP eCLIP4.51□□□□□ -1.69
LINC00560-201ENST00000564593 INSIG1O15503 277 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 WDR1O75083 606 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 WISP2O76076 250 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 HSPA4LO95757 839 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 LINGO3P0C6S8 592 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 T-ENOLP0DO92 83 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 HLA-DOBP13765 273 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 CCKBRP32239 447 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 RAB28P51157 221 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 ZNF41P51814 821 aaPredicted RBP4.51□□□□□ -1.69
LINC00560-201ENST00000564593 KIF19Q2TAC6 998 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 ARMC4Q5T2S8 1044 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 IRAK1BP1Q5VVH5 260 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 ZNF595Q8IYB9 648 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 TTC30BQ8N4P2 665 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 XXYLT1Q8NBI6 393 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 Q8NFD4 153 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 OR2AJ1Q8NGZ0 328 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 SEMA4DQ92854 862 aa4.51□□□□□ -1.69
LINC00560-201ENST00000564593 HDAC11Q96DB2 347 aa4.51□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 25.7 ms