RNA–Protein interactions for RNA: ENST00000562078.5

CLK3-206, Transcript of CDC like kinase 3, humanhuman

TSL 2

Gene CLK3, Length 2,455 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-206ENST00000562078 TTC9Q92623 222 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 SMARCD1Q96GM5 515 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 CEP41Q9BYV8 373 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 HPS4Q9NQG7 708 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 NECTIN3Q9NQS3 549 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 SNX5Q9Y5X3 404 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 C16orf96A6NNT2 1141 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 C2P06681 752 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 SBK3P0C264 359 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 GFAPP14136 432 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 ALOX12P18054 663 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 PCSK1P29120 753 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 DSC3Q14574 896 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 FBXO46Q6PJ61 603 aaPredicted RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 CLEC14AQ86T13 490 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 RETREG3Q86VR2 466 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 CCNYL1Q8N7R7 359 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 CHDHQ8NE62 594 aaPredicted RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 MCFD2Q8NI22 146 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 URGCPQ8TCY9 931 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 HTR3CQ8WXA8 447 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 RPL3LQ92901 407 aaKnown RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 GDF15Q99988 308 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 SMOC2Q9H3U7 446 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 INTS10Q9NVR2 710 aaKnown RBP13.14□□□□□ -0.31
CLK3-206ENST00000562078 FBXL12Q9NXK8 326 aa13.14□□□□□ -0.31
CLK3-206ENST00000562078 A0A0U1RQF3 1178 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 PCP4L1A6NKN8 68 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 HHLA1C9JL84 531 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 F8W810 466 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SLCO1B7G3V0H7 640 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 I6L893 689 aaPredicted RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 EEF2KO00418 725 aaKnown RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 ARPC2O15144 300 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 ZNF623O75123 536 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 CCDC159P0C7I6 412 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 TCF3P15923 654 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 NUDT1P36639 197 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 MLLT3P42568 568 aaPredicted RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 MAGEA12P43365 314 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SLC9A3P48764 834 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 ARPP19P56211 112 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 DGCR6Q14129 220 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 CAPRIN1Q14444 709 aaKnown RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 MAPRE2Q15555 327 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 RAB41Q5JT25 222 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 C6orf141Q5SZD1 244 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SPPL2BQ8TCT7 592 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 FAR1Q8WVX9 515 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 EDEM1Q92611 657 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 HDAC2Q92769 488 aaKnown RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 PSKH2Q96QS6 385 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 TRIM15Q9C019 465 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 REXO4Q9GZR2 422 aaKnown RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 IL22Q9GZX6 179 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 TASP1Q9H6P5 420 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 C8orf4Q9NR00 106 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 DDIT4Q9NX09 232 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 FBXO5Q9UKT4 447 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 ZFC3H1O60293 1989 aaKnown RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 A0A0A0MRY4 1105 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 TTC24A2A3L6 582 aaPredicted RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 FAM25AB3EWG3 89 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 FAM25CB3EWG5 89 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 FAM25GB3EWG6 89 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 FAM72CH0Y354 149 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SHOXO15266 292 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 TRIM16O95361 564 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 MT-CO1P00395 513 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SLC4A1P02730 911 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 ITGB1P05556 798 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 NCK1P16333 377 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 IMPDH1P20839 514 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 IL32P24001 234 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 GRIK1P39086 918 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 HK2P52789 917 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 EMX1Q04741 257 aaPredicted RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 FAM72AQ5TYM5 149 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 FAM72DQ6L9T8 149 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 ZYG11AQ6WRX3 759 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 FAM72BQ86X60 149 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 TP53INP2Q8IXH6 220 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 UBQLNLQ8IYU4 475 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 C8orf59Q8N0T1 100 aaPredicted RBP13.13□□□□□ -0.31
CLK3-206ENST00000562078 TMEM151AQ8N4L1 468 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 AFAP1L2Q8N4X5 818 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 ARNTL2Q8WYA1 636 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 DPF3Q92784 378 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SNAPC3Q92966 411 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SPATA13Q96N96 652 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 NODALQ96S42 347 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 AGAP2Q99490 1192 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SEPHS2Q99611 448 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 ASPSCR1Q9BZE9 553 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 SEPT10Q9P0V9 454 aa13.13□□□□□ -0.31
CLK3-206ENST00000562078 VWA8A3KMH1 1905 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 FADS2P1A8MWK0 482 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 HACD1B0YJ81 288 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 UBDO15205 165 aa13.12□□□□□ -0.31
CLK3-206ENST00000562078 RBP1P09455 135 aa13.12□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 17.5 ms