RNA–Protein interactions for RNA: ENST00000558285.5

USP3-208, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best) BASIC

Gene USP3, Length 1,742 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-208ENST00000558285 IL22Q9GZX6 179 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 ANKZF1Q9H8Y5 726 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 NLE1Q9NVX2 485 aaPredicted RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 ZDHHC3Q9NYG2 299 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 PNMA8BQ9ULN7 279 aaPredicted RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 SATB2Q9UPW6 733 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 VPS9D1Q9Y2B5 631 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 PCDHGA7Q9Y5G6 932 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 ENTPD2Q9Y5L3 495 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 ARL5AQ9Y689 179 aa8.52□□□□□ -1.05
USP3-208ENST00000558285 OAS3Q9Y6K5 1087 aaKnown RBP8.52□□□□□ -1.05
USP3-208ENST00000558285 C17orf113A0A1B0GUU1 675 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 MGAT4DA6NG13 374 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 MATN2O00339 956 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 AURKAO14965 403 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TOX3O15405 576 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 POP7O75817 140 aaKnown RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 TNFSF15O95150 251 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 MPOP05164 745 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 OR56A5P0C7T3 313 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 MYF5P13349 255 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 EZRP15311 586 aaKnown RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 MC4RP32245 332 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 NSG1P42857 185 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 FNTAP49354 379 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ATP1A2P50993 1020 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ZNF140P52738 457 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 VAC14Q08AM6 782 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 IFFO1Q0D2I5 559 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 PRKAA1Q13131 559 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 RPA4Q13156 261 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ITIH4Q14624 930 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 POU6F1Q14863 301 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 PLCL1Q15111 1095 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 BCL7AQ4VC05 210 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 FASTKD1Q53R41 847 aaKnown RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 FNBP1LQ5T0N5 605 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 KCTD11Q693B1 232 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TMEM220Q6QAJ8 160 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ABRAXAS1Q6UWZ7 409 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 NXPE1Q8N323 547 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 MPP5Q8N3R9 675 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ZSCAN1Q8NBB4 408 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 FAM76AQ8TAV0 307 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 HM13Q8TCT9 377 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ATG4AQ8WYN0 398 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 C10orf88Q9H8K7 445 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 SAMD15Q9P1V8 674 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 FKBPLQ9UIM3 349 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TTC7AQ9ULT0 858 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 DNAJC16Q9Y2G8 782 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 LOXL2Q9Y4K0 774 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 DOCK9Q9BZ29 2069 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 A0A087WV48 116 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 IGHV1OR21-1A0A087WYE8 117 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 A0A0U1RQS6 177 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 MAGEB16A2A368 324 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 KPNA5O15131 536 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 METTL18O95568 372 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 RPN2P04844 631 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ATP1B2P14415 290 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 PAFAH1B1P43034 410 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 MAPK9P45984 424 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TTPAP49638 278 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ARL4DP49703 201 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 LIMK2P53671 638 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TMPRSS3P57727 454 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 OR1D5P58170 312 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 B4GALNT1Q00973 533 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 SPARCL1Q14515 664 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TMED2Q15363 201 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 SYTL3Q4VX76 610 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 PCID2Q5JVF3 399 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 CHCHD2P9Q5T1J5 151 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 RNF187Q5TA31 235 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 PCGF5Q86SE9 256 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 SDCCAG8Q86SQ7 713 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 MAGOHBQ96A72 148 aaKnown RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 EID2BQ96D98 161 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 LINC00615Q96LM1 132 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 SLC46A1Q96NT5 459 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TLR10Q9BXR5 811 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 ACTR5Q9H9F9 607 aaPredicted RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 ETNK1Q9HBU6 452 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 XAB2Q9HCS7 855 aaKnown RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 RNF14Q9UBS8 474 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TBC1D29Q9UFV1 150 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 R3HDM2Q9Y2K5 976 aaKnown RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 PRKAB1Q9Y478 270 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 PCDHB1Q9Y5F3 818 aa8.51□□□□□ -1.05
USP3-208ENST00000558285 TDRD6O60522 2096 aaKnown RBP8.51□□□□□ -1.05
USP3-208ENST00000558285 FRYLO94915 3013 aa8.5□□□□□ -1.05
USP3-208ENST00000558285 DMXL1Q9Y485 3027 aa8.5□□□□□ -1.05
USP3-208ENST00000558285 GOLGA4Q13439 2230 aaKnown RBP8.5□□□□□ -1.05
USP3-208ENST00000558285 KNTC1P50748 2209 aa8.5□□□□□ -1.05
USP3-208ENST00000558285 OR2AG2A6NM03 316 aa8.5□□□□□ -1.05
USP3-208ENST00000558285 EIF4E1BA6NMX2 242 aaKnown RBP8.5□□□□□ -1.05
USP3-208ENST00000558285 GOLGA8KD6RF30 607 aa8.5□□□□□ -1.05
USP3-208ENST00000558285 EIF3HO15372 352 aaKnown RBP eCLIP8.5□□□□□ -1.05
USP3-208ENST00000558285 NVLO15381 856 aaKnown RBP8.5□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 47.6 ms