RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 EMX2Q04743 252 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 BTG3Q14201 252 aaPredicted RBP12.71□□□□□ -0.38
LDLR-207ENST00000558013 RAB39AQ14964 217 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 AP5B1Q2VPB7 878 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 TBC1D25Q3MII6 688 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 TMTC4Q5T4D3 741 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 CXorf57Q6NSI4 855 aaKnown RBP12.71□□□□□ -0.38
LDLR-207ENST00000558013 RGMBQ6NW40 437 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 CYP20A1Q6UW02 462 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 SBSNQ6UWP8 590 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 ENPP6Q6UWR7 440 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 ZFAND4Q86XD8 727 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 BBS5Q8N3I7 341 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 TTC30BQ8N4P2 665 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 SEPT8Q92599 483 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 ISG20Q96AZ6 181 aaKnown RBP12.71□□□□□ -0.38
LDLR-207ENST00000558013 MTFMTQ96DP5 389 aaKnown RBP12.71□□□□□ -0.38
LDLR-207ENST00000558013 DTNBP1Q96EV8 351 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 TBCDQ9BTW9 1192 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 CIPCQ9C0C6 399 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 THEGQ9P2T0 379 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 PRSS21Q9Y6M0 314 aa12.71□□□□□ -0.38
LDLR-207ENST00000558013 NUP214P35658 2090 aaPredicted RBP12.7□□□□□ -0.38
LDLR-207ENST00000558013 ZNF559-ZNF177A0A0A6YYI6 481 aaPredicted RBP12.7□□□□□ -0.38
LDLR-207ENST00000558013 TTPAP49638 278 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 CDH4P55283 916 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 ZNF177Q13360 481 aaPredicted RBP12.7□□□□□ -0.38
LDLR-207ENST00000558013 TMED1Q13445 227 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 PHKG1Q16816 387 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 GTDC1Q4AE62 458 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 KCTD21Q4G0X4 260 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 KLHL35Q6PF15 583 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 KCTD8Q6ZWB6 473 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 GPR180Q86V85 440 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 HID1Q8IV36 788 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 FAM126BQ8IXS8 530 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 KRTCAP2Q8N6L1 136 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 WFDC5Q8TCV5 224 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 IPPKQ9H8X2 491 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 FAM234BA2RU67 622 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 KRT87PA6NCN2 255 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 ZNF840PA6NDX5 716 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 OR6C75A6NL08 312 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 LSM1O15116 133 aaKnown RBP12.7□□□□□ -0.38
LDLR-207ENST00000558013 VPS4BO75351 444 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 SHMT2P34897 504 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 OR1D2P34982 312 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 CAPGP40121 348 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 SLC11A2P49281 568 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 ADARP55265 1226 aaKnown RBP12.7□□□□□ -0.38
LDLR-207ENST00000558013 PIGFQ07326 219 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 DCTN2Q13561 401 aaKnown RBP12.7□□□□□ -0.38
LDLR-207ENST00000558013 GPNMBQ14956 572 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 FRA10AC1Q70Z53 315 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 PACRGLQ8N7B6 248 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 FBXO30Q8TB52 745 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 FIG4Q92562 907 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 CASD1Q96PB1 797 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 C1QTNF3Q9BXJ4 246 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 LRRC3Q9BY71 257 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 SMURF2Q9HAU4 748 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 SLC6A13Q9NSD5 602 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 ANKRD36A6QL64 1941 aa12.7□□□□□ -0.38
LDLR-207ENST00000558013 H0Y626 953 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 ANKRD28O15084 1053 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 NOBOXO60393 691 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 TRIM16O95361 564 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 C1QCP02747 245 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 SLC2A4P14672 509 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 PAX3P23760 479 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 FCGRTP55899 365 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 RPL38P63173 70 aaKnown RBP12.69□□□□□ -0.38
LDLR-207ENST00000558013 FOXM1Q08050 763 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 ZBED5Q49AG3 693 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 COQ5Q5HYK3 327 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 ELMSAN1Q6PJG2 1045 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 XKR5Q6UX68 686 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 SLC22A15Q8IZD6 547 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 C10orf111Q8N326 155 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 TMBIM1Q969X1 311 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 NSMCE2Q96MF7 247 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 SLC22A12Q96S37 553 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 ZNF382Q96SR6 550 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 C17orf80Q9BSJ5 609 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 TIMMDC1Q9NPL8 285 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 ZNHIT2Q9UHR6 403 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 RIMKLBQ9ULI2 386 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 TAPBPO15533 448 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 TBC1D4O60343 1298 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 NBNO60934 754 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 SEC24AO95486 1093 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 GTF2H2Q13888 395 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 PDCD4Q53EL6 469 aaKnown RBP12.69□□□□□ -0.38
LDLR-207ENST00000558013 GTF2H2CQ6P1K8 395 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 STK32CQ86UX6 486 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 TBC1D21Q8IYX1 336 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 PHACTR4Q8IZ21 702 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 LRRC43Q8N309 656 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 CARNMT1Q8N4J0 409 aa12.69□□□□□ -0.38
LDLR-207ENST00000558013 OR10A6Q8NH74 314 aa12.69□□□□□ -0.38
Retrieved 100 of 20,778 RNA–protein pairs in 55.5 ms