RNA–Protein interactions for RNA: ENST00000557958.1

LDLR-206, Transcript of low density lipoprotein receptor, humanhuman

TSL 2

Gene LDLR, Length 1,881 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-206ENST00000557958 KAT7O95251 611 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 CTSLP07711 333 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 TSPAN8P19075 237 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 CUL3Q13618 768 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 SQLEQ14534 574 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 RBBP7Q16576 425 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 HNRNPA1L2Q32P51 320 aaKnown RBP16.59■□□□□ 0.25
LDLR-206ENST00000557958 CHSY3Q70JA7 882 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 PELI3Q8N2H9 469 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 CHCHD4Q8N4Q1 142 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 TRAM1L1Q8N609 369 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 TMIEQ8NEW7 156 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 LENG8Q96PV6 779 aaPredicted RBP16.59■□□□□ 0.25
LDLR-206ENST00000557958 CCT7Q99832 543 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 HGH1Q9BTY7 390 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 THTPAQ9BU02 230 aa16.59■□□□□ 0.25
LDLR-206ENST00000557958 FBRSL1Q9HCM7 1045 aaKnown RBP16.59■□□□□ 0.25
LDLR-206ENST00000557958 SEMA4BQ9NPR2 832 aaPredicted RBP16.59■□□□□ 0.25
LDLR-206ENST00000557958 COPG1Q9Y678 874 aaKnown RBP16.59■□□□□ 0.25
LDLR-206ENST00000557958 PRUNE2Q8WUY3 3088 aa16.58■□□□□ 0.25
LDLR-206ENST00000557958 LOC100653049A0A140TA62 436 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 PABPN1LA6NDY0 278 aaKnown RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 FFAR2O15552 330 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 KRT34O76011 436 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 AP2A2O94973 939 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 ESRRBO95718 433 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 ELFN1P0C7U0 828 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 HLA-EP13747 358 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 ATP1B2P14415 290 aaPredicted RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 VCLP18206 1134 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 CPOXP36551 454 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 MMP12P39900 470 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 GALK1P51570 392 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 PKNOX1P55347 436 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 STX1BP61266 288 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 ELAVL3Q14576 367 aaKnown RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 PCBP2Q15366 365 aaKnown RBP eCLIP16.58■□□□□ 0.248e-6■■■■□ 24
LDLR-206ENST00000557958 TRMT5Q32P41 509 aaKnown RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 METTL2BQ6P1Q9 378 aaKnown RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 SBSNQ6UWP8 590 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 C16orf89Q6UX73 402 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 NUDT18Q6ZVK8 323 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 DSG4Q86SJ6 1040 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 PDPRQ8NCN5 879 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 TWIST2Q8WVJ9 160 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 NSUN5Q96P11 429 aaKnown RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 PHF7Q9BWX1 381 aaPredicted RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 CXorf56Q9H5V9 222 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 DENND2DQ9H6A0 471 aaPredicted RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 TNFRSF12AQ9NP84 129 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 UTP6Q9NYH9 597 aaKnown RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 G3BP2Q9UN86 482 aaKnown RBP16.58■□□□□ 0.24
LDLR-206ENST00000557958 DNAJC15Q9Y5T4 150 aa16.58■□□□□ 0.24
LDLR-206ENST00000557958 LRRC14BA6NHZ5 514 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 MEI4A8MW99 385 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 H0Y858 1186 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 ARNTLO00327 626 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 APODP05090 189 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 UROSP10746 265 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 ITGB7P26010 798 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 CA5AP35218 305 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 ATP4BP51164 291 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 SEC13P55735 322 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 ELP6Q0PNE2 266 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 UGT3A2Q3SY77 523 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 TMEM198Q66K66 360 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 HSD11B1LQ7Z5J1 315 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 SNX32Q86XE0 403 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 ULK2Q8IYT8 1036 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 NRSN1Q8IZ57 195 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 PLCD3Q8N3E9 789 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 SLC44A3Q8N4M1 653 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 LKAAEAR1Q8TD35 194 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 STMN2Q93045 179 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 CCDC97Q96F63 343 aaPredicted RBP16.57■□□□□ 0.24
LDLR-206ENST00000557958 ZNF382Q96SR6 550 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 RDH14Q9HBH5 336 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 CD84Q9UIB8 345 aa16.57■□□□□ 0.24
LDLR-206ENST00000557958 MSH3P20585 1137 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 HK3P52790 923 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 TFF2Q03403 129 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 E2F5Q15329 346 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 PPP1R3AQ16821 1122 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 POM121L1PQ3SYA9 428 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 ACSBG2Q5FVE4 666 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 CDKL4Q5MAI5 379 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 LDLRAP1Q5SW96 308 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 SULT1C3Q6IMI6 304 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 PTCRAQ6ISU1 281 aaPredicted RBP16.56■□□□□ 0.24
LDLR-206ENST00000557958 SERPINA13PQ6UXR4 307 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 GPRIN3Q6ZVF9 776 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 NET1Q7Z628 596 aaPredicted RBP16.56■□□□□ 0.24
LDLR-206ENST00000557958 DDIASQ8IXT1 998 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 FBXO27Q8NI29 283 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 EGFL8Q99944 293 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 EBF2Q9HAK2 575 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 DYRK4Q9NR20 520 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 HEBP1Q9NRV9 189 aa16.56■□□□□ 0.24
LDLR-206ENST00000557958 EIF2B4Q9UI10 523 aaKnown RBP16.56■□□□□ 0.24
LDLR-206ENST00000557958 E2F3O00716 465 aa16.56■□□□□ 0.24
Retrieved 100 of 20,778 RNA–protein pairs in 70.6 ms