RNA–Protein interactions for RNA: ENST00000557427.5

SHMT2-230, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 569 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-230ENST00000557427 GBE1Q04446 702 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 SLC10A2Q12908 348 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-230ENST00000557427 LRRC14Q15048 493 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 EIF2S3LQ2VIR3 472 aaKnown RBP12.37□□□□□ -0.43
SHMT2-230ENST00000557427 FNBP1LQ5T0N5 605 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 FAM182AQ5T1J6 154 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 TTC19Q6DKK2 380 aaPredicted RBP12.37□□□□□ -0.43
SHMT2-230ENST00000557427 TCTN3Q6NUS6 607 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 RD3Q7Z3Z2 195 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 EXOC3L1Q86VI1 746 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 GKN2Q86XP6 184 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 ZBED8Q8IZ13 594 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 CCNYQ8ND76 341 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 CPT1CQ8TCG5 803 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 BCAS4Q8TDM0 211 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 TCTN2Q96GX1 697 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 NUDCD1Q96RS6 583 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 C1QTNF7Q9BXJ2 289 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 DTLQ9NZJ0 730 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 SLC24A2Q9UI40 661 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 KCNMB2Q9Y691 235 aa12.37□□□□□ -0.43
SHMT2-230ENST00000557427 PDZD2O15018 2839 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 APCP25054 2843 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 EXOC1LA0A1B0GW35 172 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 TCRBV7S3A2A0A539 114 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 TTLL8A6PVC2 850 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 CAPN5O15484 640 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-230ENST00000557427 MMP12P39900 470 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 GARSP41250 739 aaKnown RBP12.36□□□□□ -0.43
SHMT2-230ENST00000557427 BLKP51451 505 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 GALNT2Q10471 571 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 INPP5AQ14642 412 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 FASTKD3Q14CZ7 662 aaKnown RBP12.36□□□□□ -0.43
SHMT2-230ENST00000557427 ACOX1Q15067 660 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 PTPRRQ15256 657 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 IRF4Q15306 451 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 WSCD2Q2TBF2 565 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 KRTAP21-3Q3LHN1 58 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 CCDC38Q502W7 563 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 ASB18Q6ZVZ8 466 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 TIPARPQ7Z3E1 657 aaKnown RBP12.36□□□□□ -0.43
SHMT2-230ENST00000557427 PIM3Q86V86 326 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 LRRC49Q8IUZ0 686 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 CCDC13Q8IYE1 715 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 MCUQ8NE86 351 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 PYROXD1Q8WU10 500 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 TFB1MQ8WVM0 346 aaKnown RBP12.36□□□□□ -0.43
SHMT2-230ENST00000557427 ECHDC3Q96DC8 303 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 CCDC74BQ96LY2 380 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 SELENOSQ9BQE4 189 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 DDA1Q9BW61 102 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 VPS37BQ9H9H4 285 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 GPN2Q9H9Y4 310 aaPredicted RBP12.36□□□□□ -0.43
SHMT2-230ENST00000557427 RAB6BQ9NRW1 208 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 RBM22Q9NW64 420 aaKnown RBP eCLIP12.36□□□□□ -0.431e-9■■■■□ 20
SHMT2-230ENST00000557427 MAP4K5Q9Y4K4 846 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 TTLL3Q9Y4R7 772 aa12.36□□□□□ -0.43
SHMT2-230ENST00000557427 GOLGA8MH3BSY2 632 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 HGSO14964 777 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 MATN3O15232 486 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 SPAG6O75602 509 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 RECQL5O94762 991 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 RASGRP1O95267 797 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 CPNE6O95741 557 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 LDLRP01130 860 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 JCHAINP01591 159 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 PCCBP05166 539 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 ELFN1P0C7U0 828 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 CHN1P15882 459 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 CTPS1P17812 591 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 TPSB2P20231 275 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 CCNCP24863 283 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 HNRNPH2P55795 449 aaKnown RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 OR1D5P58170 312 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 GPX6P59796 221 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 TRAF2Q12933 501 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 MRPL49Q13405 166 aaKnown RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 SEPT6Q14141 434 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 PDK1Q15118 436 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 PRKD1Q15139 912 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 TPSAB1Q15661 275 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 AMZ1Q400G9 498 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 MSS51Q4VC12 460 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 C14orf28Q4W4Y0 310 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 C16orf46Q6P387 395 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 ENPP7Q6UWV6 458 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 LIPIQ6XZB0 460 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 B4GALNT4Q76KP1 1039 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 EFCAB3Q8N7B9 438 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 PLA2G15Q8NCC3 412 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 MAML1Q92585 1016 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 FUBP1Q96AE4 644 aaKnown RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 FERMT1Q9BQL6 677 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 MGME1Q9BQP7 344 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 APOOQ9BUR5 198 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 CCDC134Q9H6E4 229 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 OCIAD1Q9NX40 245 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 AKAP7Q9P0M2 348 aaPredicted RBP12.35□□□□□ -0.43
SHMT2-230ENST00000557427 CTNNAL1Q9UBT7 734 aa12.35□□□□□ -0.43
SHMT2-230ENST00000557427 B4GALT6Q9UBX8 382 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 34.5 ms