RNA–Protein interactions for RNA: ENST00000557269.5

SHMT2-227, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 5

Gene SHMT2, Length 576 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-227ENST00000557269 GNPTGQ9UJJ9 305 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 VPS9D1Q9Y2B5 631 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 WDR37Q9Y2I8 494 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 MTO1Q9Y2Z2 717 aaKnown RBP12.59□□□□□ -0.39
SHMT2-227ENST00000557269 PCDHB1Q9Y5F3 818 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 CSNK1G3Q9Y6M4 447 aa12.59□□□□□ -0.39
SHMT2-227ENST00000557269 WDR87Q6ZQQ6 2873 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 C17orf113A0A1B0GUU1 675 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-227ENST00000557269 HMX2A2RU54 273 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 A6NCN8 305 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 YKT6O15498 198 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 SNX2O60749 519 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 FTH1P02794 183 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 ZNF883P0CG24 379 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 MYF5P13349 255 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 BRAFP15056 766 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 RPL10P27635 214 aaKnown RBP12.58□□□□□ -0.4
SHMT2-227ENST00000557269 AOAHP28039 575 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 PDHA2P29803 388 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 GP5P40197 560 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 PREPP48147 710 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 CLCN7P51798 805 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 CSE1LP55060 971 aaKnown RBP12.58□□□□□ -0.4
SHMT2-227ENST00000557269 DMPKQ09013 629 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 ELOCQ15369 112 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 SEPT7Q16181 437 aaKnown RBP12.58□□□□□ -0.4
SHMT2-227ENST00000557269 STPG1Q5TH74 334 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 HECTD2Q5U5R9 776 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 METRNLQ641Q3 311 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 PIM3Q86V86 326 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 VRK3Q8IV63 474 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 EID2Q8N6I1 236 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 GPATCH11Q8N954 259 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 SIDT2Q8NBJ9 832 aaKnown RBP12.58□□□□□ -0.4
SHMT2-227ENST00000557269 FAM46DQ8NEK8 389 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 GABPB2Q8TAK5 448 aaPredicted RBP12.58□□□□□ -0.4
SHMT2-227ENST00000557269 PATE1Q8WXA2 126 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 ELMO1Q92556 727 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 VPS39Q96JC1 886 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 RBBP8Q99708 897 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 OLFM1Q99784 485 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 CPNE1Q99829 537 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 OSGEPL1Q9H4B0 414 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 RHOJQ9H4E5 214 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 COG4Q9H9E3 785 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 SARS2Q9NP81 518 aaKnown RBP12.58□□□□□ -0.4
SHMT2-227ENST00000557269 NSMCE4AQ9NXX6 385 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 PSMD13Q9UNM6 376 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 CDYLQ9Y232 598 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 PCDHGB2Q9Y5G2 931 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 DNAH14Q0VDD8 3507 aa12.58□□□□□ -0.4
SHMT2-227ENST00000557269 EP300Q09472 2414 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-227ENST00000557269 TRBV23OR9-2A0A075B6M9 112 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 PRAMEF33A0A0G2JMD5 474 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 SLC5A10A0PJK1 596 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 POC1B-GALNT4F8VUJ3 575 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 QSOX1O00391 747 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 ANXA6P08133 673 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 CHRM3P20309 590 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 CLCNKAP51800 687 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 NAB1Q13506 487 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 BOP1Q14137 746 aaKnown RBP12.57□□□□□ -0.4
SHMT2-227ENST00000557269 CLCA4Q14CN2 919 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 GRTP1Q5TC63 336 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 GKN2Q86XP6 184 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 SPDYE1Q8NFV5 336 aaPredicted RBP12.57□□□□□ -0.4
SHMT2-227ENST00000557269 OR2W6PQ8NHA6 318 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 HM13Q8TCT9 377 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 DCAKDQ8WVC6 231 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 SLC44A1Q8WWI5 657 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 ELMO2Q96JJ3 720 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 CAMK1GQ96NX5 476 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 PAFAH2Q99487 392 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 GPR21Q99679 349 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 DHRS4Q9BTZ2 278 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 WWP1Q9H0M0 922 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 DPEP2Q9H4A9 486 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 CAB39LQ9H9S4 337 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 SIRPGQ9P1W8 387 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 VWA7Q9Y334 891 aa12.57□□□□□ -0.4
SHMT2-227ENST00000557269 LY6G6EA0A0G2JKS1 128 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 EXOC1LA0A1B0GW35 172 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 FAM95CA0A1B0GW59 222 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 NEMP2A6NFY4 417 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 B4DGG1 531 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 H3BMM5 538 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 TPP1O14773 563 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 SIGLEC6O43699 453 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 SH3BP5O60239 455 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 NOBOXO60393 691 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 FOXD2O60548 495 aaPredicted RBP12.56□□□□□ -0.4
SHMT2-227ENST00000557269 KCNJ13O60928 360 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 GPC4O75487 556 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 VCLP18206 1134 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 SAT1P21673 171 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 IDSP22304 550 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 FDXRP22570 491 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 LIMK2P53671 638 aa12.56□□□□□ -0.4
SHMT2-227ENST00000557269 TAS2R39P59534 338 aa12.56□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 22.9 ms