RNA–Protein interactions for RNA: ENST00000554079.1

SIX4-202, Transcript of SIX homeobox 4, humanhuman

TSL 1 (best)

Gene SIX4, Length 2,003 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SIX4-202ENST00000554079 DHX35Q9H5Z1 703 aaKnown RBP9.44□□□□□ -0.9
SIX4-202ENST00000554079 MEAF6Q9HAF1 191 aa9.44□□□□□ -0.9
SIX4-202ENST00000554079 IL1RL2Q9HB29 575 aa9.44□□□□□ -0.9
SIX4-202ENST00000554079 EMC3Q9P0I2 261 aa9.44□□□□□ -0.9
SIX4-202ENST00000554079 ANKRD6Q9Y2G4 727 aa9.44□□□□□ -0.9
SIX4-202ENST00000554079 U3KQV3 271 aa9.44□□□□□ -0.9
SIX4-202ENST00000554079 MIA3Q5JRA6 1907 aa9.44□□□□□ -0.9
SIX4-202ENST00000554079 USP17L10C9JJH3 530 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 BTN3A1O00481 513 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 MEIS2O14770 477 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 TLL1O43897 1013 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 GMDSO60547 372 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 ENDOD1O94919 500 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 ITGBL1O95965 494 aaPredicted RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 ASS1P00966 412 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 RRASP10301 218 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 HOXD8P13378 290 aaPredicted RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 ZP3P21754 424 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 GADD45AP24522 165 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 PSMA2P25787 234 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 LIPAP38571 399 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CSRP3P50461 194 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 PRELPP51888 382 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 LIMK1P53667 647 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 LIMK2P53671 638 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 SNRPFP62306 86 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 SEMA3AQ14563 771 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 POU4F3Q15319 338 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 STXBP2Q15833 593 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 HADHQ16836 314 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 PTCHD3Q3KNS1 767 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 HSDL1Q3SXM5 330 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CLLU1Q5K131 121 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 ANKRD34AQ69YU3 496 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 PAMR1Q6UXH9 720 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 HTR3DQ70Z44 454 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 C16orf62Q7Z3J2 963 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 MRPL10Q7Z7H8 261 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 LRRTM3Q86VH5 581 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 OR8H3Q8N146 312 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 EMC1Q8N766 993 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 OR7G3Q8NG95 312 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 ATOH1Q92858 354 aaPredicted RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 TMEM125Q96AQ2 219 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 TEPSINQ96N21 525 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 SIGLEC11Q96RL6 698 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CPNE1Q99829 537 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 MXRA8Q9BRK3 442 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CDCA7Q9BWT1 371 aaPredicted RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 C1QTNF1Q9BXJ1 281 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 SLC6A15Q9H2J7 730 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 COA4Q9NYJ1 87 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 FBXO10Q9UK96 956 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 TMEM5Q9Y2B1 443 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 LOC100130705A0A1B0GUX0 176 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 BCLAF3A2AJT9 711 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 CCDC182A6NF36 153 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 LRRC72A6NJI9 287 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 C2orf81A6NN90 581 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 TARM1B6A8C7 271 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 SMLR1H3BR10 107 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 UBXN8O00124 270 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 POLRMTO00411 1230 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 NPHS1O60500 1241 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 SUPT7LO94864 414 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 LCKP06239 509 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 GPX3P22352 226 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 HRH2P25021 359 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 FMO3P31513 532 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 GRK5P34947 590 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CA5AP35218 305 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 KCNC1P48547 511 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CYP4F2P78329 520 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CRADDP78560 199 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CYP24A1Q07973 514 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CYP4F3Q08477 520 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 IL18R1Q13478 541 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 ASAH1Q13510 395 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CAPRIN1Q14444 709 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 SMAD1Q15797 465 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 KIF19Q2TAC6 998 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 UGT3A2Q3SY77 523 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 HABP4Q5JVS0 413 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 GPR139Q6DWJ6 353 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 CNSTQ6PJW8 725 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 KDELC1Q6UW63 502 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 DPP9Q86TI2 863 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 TRIM48Q8IWZ4 208 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 KCTD6Q8NC69 237 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 C3orf58Q8NDZ4 430 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 JOSD2Q8TAC2 188 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 UBASH3BQ8TF42 649 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 STYXQ8WUJ0 223 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 ASB15Q8WXK1 588 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 ARNTL2Q8WYA1 636 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 RBPMSQ93062 196 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 FUBP1Q96AE4 644 aaKnown RBP9.43□□□□□ -0.9
SIX4-202ENST00000554079 FRMD6Q96NE9 622 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 SEPHS2Q99611 448 aa9.43□□□□□ -0.9
SIX4-202ENST00000554079 SLC30A2Q9BRI3 323 aa9.43□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 55.1 ms