RNA–Protein interactions for RNA: ENST00000550267.1

VPS29-208, Transcript of VPS29, retromer complex component, humanhuman

TSL 2

Gene VPS29, Length 810 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-208ENST00000550267 UBXN4Q92575 508 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 HSPH1Q92598 858 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 CXorf40BQ96DE9 158 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 MOCOSQ96EN8 888 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 ZNF514Q96K75 400 aaPredicted RBP10.27□□□□□ -0.77
VPS29-208ENST00000550267 CSPG4P5Q96PW8 444 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 LYSMD1Q96S90 227 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 MAP3K3Q99759 626 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 RAB33BQ9H082 229 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 TRIM39Q9HCM9 518 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 WASH6PQ9NQA3 447 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 GPR83Q9NYM4 423 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 SEMA5BQ9P283 1151 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 SNX7Q9UNH6 387 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 TTLL3Q9Y4R7 772 aa10.27□□□□□ -0.77
VPS29-208ENST00000550267 ADARB2-AS1A8MUL3 147 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 CHUKO15111 745 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 KMOO15229 486 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 HNRNPRO43390 633 aaKnown RBP10.26□□□□□ -0.77
VPS29-208ENST00000550267 MTX2O75431 263 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 JCHAINP01591 159 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 TCF4P15884 667 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 HNRNPH3P31942 346 aaKnown RBP10.26□□□□□ -0.77
VPS29-208ENST00000550267 SERPINB6P35237 376 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 ARL4DP49703 201 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 VAV2P52735 878 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 CDK18Q07002 472 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 NIPAL4Q0D2K0 466 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 ELOAQ14241 798 aaKnown RBP10.26□□□□□ -0.77
VPS29-208ENST00000550267 GPR19Q15760 415 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 DPYSL2Q16555 572 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 ANKRD20A8PQ5CZ79 823 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 NKAPLQ5M9Q1 402 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 SYT9Q86SS6 491 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 LRRTM4Q86VH4 590 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 TMEM126BQ8IUX1 230 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 RBM12BQ8IXT5 1001 aaKnown RBP10.26□□□□□ -0.77
VPS29-208ENST00000550267 SLC34A3Q8N130 599 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 TTC30BQ8N4P2 665 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 ZBTB2Q8N680 514 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 GLIS1Q8NBF1 620 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 SLC38A9Q8NBW4 561 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 GPR150Q8NGU9 434 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 ARRDC2Q8TBH0 407 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 ZNF653Q96CK0 615 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 EID2BQ96D98 161 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 SMAD5Q99717 465 aaKnown RBP10.26□□□□□ -0.77
VPS29-208ENST00000550267 TIMM29Q9BSF4 260 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 SPATA16Q9BXB7 569 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 UNKQ9C0B0 810 aaKnown RBP10.26□□□□□ -0.77
VPS29-208ENST00000550267 PCDH9Q9HC56 1237 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 WDR37Q9Y2I8 494 aa10.26□□□□□ -0.77
VPS29-208ENST00000550267 RGSL1A5PLK6 1076 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 F5H423 210 aaPredicted RBP10.25□□□□□ -0.77
VPS29-208ENST00000550267 IDSP22304 550 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 CA4P22748 312 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 RPL26P61254 145 aaKnown RBP10.25□□□□□ -0.77
VPS29-208ENST00000550267 NAA30Q147X3 362 aaPredicted RBP10.25□□□□□ -0.77
VPS29-208ENST00000550267 KYNUQ16719 465 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 PRAMEF17Q5VTA0 474 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 AGAP9Q5VTM2 703 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 TXNRD3NBQ6F5E7 133 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 ALG1LQ6GMV1 187 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 ZNF517Q6ZMY9 492 aaPredicted RBP10.25□□□□□ -0.77
VPS29-208ENST00000550267 MED25Q71SY5 747 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 ZNF547Q8IVP9 402 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 D2HGDHQ8N465 521 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 GPR26Q8NDV2 337 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 CCHCR1Q8TD31 782 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 MAML1Q92585 1016 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 GLYATL1Q969I3 302 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 ZNF501Q96CX3 271 aaPredicted RBP10.25□□□□□ -0.77
VPS29-208ENST00000550267 PCDH18Q9HCL0 1135 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 KCND1Q9NSA2 647 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 STAU2Q9NUL3 570 aaKnown RBP eCLIP10.25□□□□□ -0.77
VPS29-208ENST00000550267 RBM22Q9NW64 420 aaKnown RBP eCLIP10.25□□□□□ -0.772e-8■□□□□ 9.5
VPS29-208ENST00000550267 TCFL5Q9UL49 500 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 RPL26L1Q9UNX3 145 aaKnown RBP10.25□□□□□ -0.77
VPS29-208ENST00000550267 NTNG1Q9Y2I2 539 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 ABCA12Q86UK0 2595 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 ESPL1Q14674 2120 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 PCSK5Q92824 1860 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 CRYBG3Q68DQ2 2970 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 MED13Q9UHV7 2174 aa10.25□□□□□ -0.77
VPS29-208ENST00000550267 FBN2P35556 2912 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 UBA6A0AVT1 1052 aaPredicted RBP10.24□□□□□ -0.77
VPS29-208ENST00000550267 GPR89AB7ZAQ6 455 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 DDX3YO15523 660 aaKnown RBP10.24□□□□□ -0.77
VPS29-208ENST00000550267 MFSD11O43934 449 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 KLK3P07288 261 aaPredicted RBP10.24□□□□□ -0.77
VPS29-208ENST00000550267 TPM2P07951 284 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 RAB40ALP0C0E4 278 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 GPR89BP0CG08 455 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 RARAP10276 462 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 ATP1A3P13637 1013 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 PCK1P35558 622 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 ZNF165P49910 485 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 UBE2HP62256 183 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 TUBB4BP68371 445 aa10.24□□□□□ -0.77
VPS29-208ENST00000550267 ATP1A4Q13733 1029 aa10.24□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 52 ms