RNA–Protein interactions for RNA: ENST00000548650.1

CHMP1A-205, Transcript of charged multivesicular body protein 1A, humanhuman

TSL 3

Gene CHMP1A, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHMP1A-205ENST00000548650 LUC7LQ9NQ29 371 aaKnown RBP17.02■□□□□ 0.32
CHMP1A-205ENST00000548650 IMP3Q9NV31 184 aaKnown RBP17.02■□□□□ 0.32
CHMP1A-205ENST00000548650 FKBPLQ9UIM3 349 aa17.02■□□□□ 0.32
CHMP1A-205ENST00000548650 CROTQ9UKG9 612 aa17.02■□□□□ 0.32
CHMP1A-205ENST00000548650 DNMT3AQ9Y6K1 912 aaPredicted RBP17.02■□□□□ 0.32
CHMP1A-205ENST00000548650 NBASA2RRP1 2371 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 IGHV5-51A0A0C4DH38 117 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 SOWAHDA6NJG2 315 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 TIAF1O95411 115 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 TCN2P20062 427 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 MSH3P20585 1137 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 LPOP22079 712 aaPredicted RBP17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 CYLC1P35663 651 aaPredicted RBP17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 DLSTP36957 453 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 MSLNQ13421 630 aaPredicted RBP17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 TUBB3Q13509 450 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 DEFB109BQ30KR1 87 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 LARP7Q4G0J3 582 aaKnown RBP eCLIP17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 CCDC181Q5TID7 509 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 METRNLQ641Q3 311 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 C16orf46Q6P387 395 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 DET1Q7L5Y6 550 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 PPP1R3BQ86XI6 285 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 PTRH1Q86Y79 214 aaKnown RBP17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 OR4K2Q8NGD2 314 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 C9orf43Q8TAL5 461 aaPredicted RBP17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 ZNF398Q8TD17 642 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 UBXN4Q92575 508 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 STAMBPL1Q96FJ0 436 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 ZNF514Q96K75 400 aaPredicted RBP17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 FAM118BQ9BPY3 351 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 WWP1Q9H0M0 922 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 LNPEPQ9UIQ6 1025 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 EFR3BQ9Y2G0 817 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 KCTD3Q9Y597 815 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 PCDHA3Q9Y5H8 950 aa17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 CFAP20Q9Y6A4 193 aaKnown RBP17.01■□□□□ 0.31
CHMP1A-205ENST00000548650 MGAT4DA6NG13 374 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 SGTAO43765 313 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 SPAG6O75602 509 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 SRP72O76094 671 aaKnown RBP17■□□□□ 0.31
CHMP1A-205ENST00000548650 RBP3P10745 1247 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 CTNNA2P26232 953 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 ZNF140P52738 457 aaPredicted RBP17■□□□□ 0.31
CHMP1A-205ENST00000548650 XIAPP98170 497 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 TLE1Q04724 770 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 KCNAB1Q14722 419 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 PLCL1Q15111 1095 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 BCL7AQ4VC05 210 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 ANKRD20A2Q5SQ80 823 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 ANKRD20A1Q5TYW2 823 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 ANKRD20A3Q5VUR7 823 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 KLHL35Q6PF15 583 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 APOBEC4Q8WW27 367 aaKnown RBP17■□□□□ 0.31
CHMP1A-205ENST00000548650 ALG3Q92685 438 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 RMDN2Q96LZ7 410 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 SPATA13Q96N96 652 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 OSBPL8Q9BZF1 889 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 EPN3Q9H201 632 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 REXO2Q9Y3B8 237 aaKnown RBP17■□□□□ 0.31
CHMP1A-205ENST00000548650 PIKFYVEQ9Y2I7 2098 aa17■□□□□ 0.31
CHMP1A-205ENST00000548650 FLNCQ14315 2725 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 OR5K3A6NET4 321 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 C5orf60A6NFR6 353 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 TLCD2A6NGC4 264 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 C2orf81A6NN90 581 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 AGAP14A8MT82 685 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 KCNN4O15554 427 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 FOLR1P15328 257 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 EIF3EP60228 445 aaKnown RBP16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 DNTTIP2Q5QJE6 756 aaKnown RBP16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 CYB5D1Q6P9G0 228 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 CERS6Q6ZMG9 384 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 KLHDC8BQ8IXV7 354 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 SPDYE1Q8NFV5 336 aaPredicted RBP16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 OR13C4Q8NGS5 318 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 OR2L2Q8NH16 312 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 CCDC110Q8TBZ0 833 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 LINC00615Q96LM1 132 aaPredicted RBP16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 C12orf66Q96MD2 445 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 PANX2Q96RD6 677 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 INSM2Q96T92 566 aaPredicted RBP16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 CD180Q99467 661 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 MAP3K3Q99759 626 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 ASB8Q9H765 288 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 FAM8A1Q9UBU6 413 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 SLC24A2Q9UI40 661 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 AAR2Q9Y312 384 aaKnown RBP16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 DUSP10Q9Y6W6 482 aa16.99■□□□□ 0.31
CHMP1A-205ENST00000548650 SPENQ96T58 3664 aaKnown RBP16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 MAST4O15021 2626 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 CCDC66A2RUB6 948 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 KLHL33A6NCF5 533 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 FURINP09958 794 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 SLC35G4P0C7Q5 338 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 EBLN1P0CF75 366 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 DNASE1L3Q13609 305 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 SKIDA1Q1XH10 827 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 DENND5AQ6IQ26 1287 aa16.98■□□□□ 0.31
CHMP1A-205ENST00000548650 PWWP2BQ6NUJ5 590 aa16.98■□□□□ 0.31
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms