RNA–Protein interactions for RNA: ENST00000546164.5

YBX3-217, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 805 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-217ENST00000546164 PAPD7Q5XG87 772 aaKnown RBP11.64□□□□□ -0.55
YBX3-217ENST00000546164 TMEM71Q6P5X7 295 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 LRRC8BQ6P9F7 803 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 CCDC137Q6PK04 289 aaKnown RBP11.64□□□□□ -0.55
YBX3-217ENST00000546164 AFTPHQ6ULP2 937 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 PACS1Q6VY07 963 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 ZNF534Q76KX8 674 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 DET1Q7L5Y6 550 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 CLEC14AQ86T13 490 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 ZNF761Q86XN6 746 aaPredicted RBP11.64□□□□□ -0.55
YBX3-217ENST00000546164 TRIM48Q8IWZ4 208 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 FBXO39Q8N4B4 442 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 PPHLN1Q8NEY8 458 aaKnown RBP11.64□□□□□ -0.55
YBX3-217ENST00000546164 HM13Q8TCT9 377 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 HDAC10Q969S8 669 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 ZNF778Q96MU6 729 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 CMKLR1Q99788 373 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 MRM3Q9HC36 420 aaKnown RBP11.64□□□□□ -0.55
YBX3-217ENST00000546164 SLC40A1Q9NP59 571 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 KCND1Q9NSA2 647 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 TREX1Q9NSU2 369 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 SMARCAL1Q9NZC9 954 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 BFARQ9NZS9 450 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 SLC2A6Q9UGQ3 507 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 LOXL2Q9Y4K0 774 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 PCDHGA7Q9Y5G6 932 aa11.64□□□□□ -0.55
YBX3-217ENST00000546164 PTPRQQ9UMZ3 2332 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 TCRBV7S3A2A0A539 114 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 CCDC78A2IDD5 438 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 PMS2P1A4D2B8 440 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 OR52A4PA6NMU1 304 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 QSOX1O00391 747 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 ZNF185O15231 689 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 TNFSF15O95150 251 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 PRSS56P0CW18 603 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 SESN2P58004 480 aaPredicted RBP11.63□□□□□ -0.55
YBX3-217ENST00000546164 SARNPP82979 210 aaKnown RBP11.63□□□□□ -0.55
YBX3-217ENST00000546164 GPS1Q13098 491 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 C16orf72Q14CZ0 275 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 TRIP13Q15645 432 aaPredicted RBP11.63□□□□□ -0.55
YBX3-217ENST00000546164 RPE65Q16518 533 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 PHF19Q5T6S3 580 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 LYPLAL1Q5VWZ2 237 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 CERS6Q6ZMG9 384 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 MICALCLQ6ZW33 695 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 TAS2R42Q7RTR8 314 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 OR4L1Q8NH43 312 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 GRK7Q8WTQ7 553 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 SLCO2A1Q92959 643 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 TBRG4Q969Z0 631 aaKnown RBP eCLIP11.63□□□□□ -0.55
YBX3-217ENST00000546164 CXorf40BQ96DE9 158 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 AHCYL2Q96HN2 611 aaKnown RBP11.63□□□□□ -0.55
YBX3-217ENST00000546164 CCDC74BQ96LY2 380 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 KIFC1Q9BW19 673 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 TBC1D10AQ9BXI6 508 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 B3GNT4Q9C0J1 378 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 VPS37BQ9H9H4 285 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 AKAP7Q9P0M2 348 aaPredicted RBP11.63□□□□□ -0.55
YBX3-217ENST00000546164 ACSL6Q9UKU0 697 aa11.63□□□□□ -0.55
YBX3-217ENST00000546164 MN1Q10571 1320 aaPredicted RBP11.62□□□□□ -0.55
YBX3-217ENST00000546164 OR51F1A6NGY5 319 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 GOT2P00505 430 aaKnown RBP11.62□□□□□ -0.55
YBX3-217ENST00000546164 C9P02748 559 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 MTHFD1P11586 935 aaKnown RBP11.62□□□□□ -0.55
YBX3-217ENST00000546164 MLNP12872 115 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 VPS41P49754 854 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 PCBP4P57723 403 aaKnown RBP11.62□□□□□ -0.55
YBX3-217ENST00000546164 RPA4Q13156 261 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 GPR18Q14330 331 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 CAPRIN2Q6IMN6 1127 aaKnown RBP11.62□□□□□ -0.55
YBX3-217ENST00000546164 ARHGAP22Q7Z5H3 698 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 CREG2Q8IUH2 290 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 CLDN19Q8N6F1 224 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 ZNF248Q8NDW4 579 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 MCUQ8NE86 351 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 NAT14Q8WUY8 206 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 ZFPM2Q8WW38 1151 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 CPT1BQ92523 772 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 TTC1Q99614 292 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 NAPGQ99747 312 aaPredicted RBP11.62□□□□□ -0.55
YBX3-217ENST00000546164 CCM2Q9BSQ5 444 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 CHRAC1Q9NRG0 131 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 OGFRQ9NZT2 677 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 TMEM9Q9P0T7 183 aa11.62□□□□□ -0.55
YBX3-217ENST00000546164 PRAMEF33A0A0G2JMD5 474 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 NVLO15381 856 aaKnown RBP11.61□□□□□ -0.55
YBX3-217ENST00000546164 RRP8O43159 456 aaKnown RBP11.61□□□□□ -0.55
YBX3-217ENST00000546164 TMEM63AO94886 807 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 UBXN7O94888 489 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 ANKRD34CP0C6C1 535 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 SLC35G4P0C7Q5 338 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 JMJD7P0C870 316 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 HGFP14210 728 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 MGAT1P26572 445 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 PBLDP30039 288 aaPredicted RBP11.61□□□□□ -0.55
YBX3-217ENST00000546164 PPARGP37231 505 aaPredicted RBP11.61□□□□□ -0.55
YBX3-217ENST00000546164 MAGEA3P43357 314 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 CAPZBP47756 277 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 PRAMEP78395 509 aa11.61□□□□□ -0.55
YBX3-217ENST00000546164 CRADDP78560 199 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms