RNA–Protein interactions for RNA: ENST00000543205.1

CLIP1-217, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2

Gene CLIP1, Length 2,018 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-217ENST00000543205 NOMO1Q15155 1222 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CST6Q15828 149 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 POM121L1PQ3SYA9 428 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SETMARQ53H47 684 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CT83Q5H943 113 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ZC3H14Q6PJT7 736 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 SLC13A5Q86YT5 568 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CDKL3Q8IVW4 592 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 CCDC103Q8IW40 242 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PPIL6Q8IXY8 311 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 MFSD4AQ8N468 514 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 AVL9Q8NBF6 648 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 OR6K2Q8NGY2 324 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PIP4K2CQ8TBX8 421 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ACTL9Q8TC94 416 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ADAMTS15Q8TE58 950 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 STYXQ8WUJ0 223 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 MAIP1Q8WWC4 291 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ATOH1Q92858 354 aaPredicted RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 FATE1Q969F0 183 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PPP1R16AQ96I34 528 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 LRIG1Q96JA1 1093 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 PABPC3Q9H361 631 aaKnown RBP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 NT5MQ9NPB1 228 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 RBM22Q9NW64 420 aaKnown RBP eCLIP5.11□□□□□ -1.59
CLIP1-217ENST00000543205 TMEM160Q9NX00 188 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 LHX3Q9UBR4 397 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 U3KQE9 123 aa5.11□□□□□ -1.59
CLIP1-217ENST00000543205 ATG2BQ96BY7 2078 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 ACACBO00763 2458 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 hCG_1807616A0A1W2PRN6 198 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CCDC154A6NI56 674 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 KCNK1O00180 336 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 KPNA3O00505 521 aaPredicted RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 MID1O15344 667 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 RPP40O75818 363 aaKnown RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 ZNF189O75820 626 aaPredicted RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 FSBPO95073 299 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 MLYCDO95822 493 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 PEX11BO96011 259 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 FGGP02679 453 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CEACAM5P06731 702 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CTSLP07711 333 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 OXTRP30559 389 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CASQ1P31415 396 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 GKP32189 559 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 ACSL1P33121 698 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CNR2P34972 360 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CSNK1DP48730 415 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 TPMTP51580 245 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 AFF3P51826 1226 aaKnown RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 MAXP61244 160 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 PRKD1Q15139 912 aaPredicted RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 DPY19L1Q2PZI1 675 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 ANKRD39Q53RE8 183 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 ESRP1Q6NXG1 681 aaKnown RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 SHQ1Q6PI26 577 aaKnown RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 GDPD4Q6W3E5 623 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CEP68Q76N32 757 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 FAM124AQ86V42 546 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 HDDC3Q8N4P3 179 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 TEX26Q8N6G2 289 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 Q8NFD4 153 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 PPP1R14CQ8TAE6 165 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 HTR3CQ8WXA8 447 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 RLN3Q8WXF3 142 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 MAML1Q92585 1016 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 ZNF566Q969W8 418 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 QKIQ96PU8 341 aaKnown RBP eCLIP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 PSKH2Q96QS6 385 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 NUDCD1Q96RS6 583 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 TUBGCP5Q96RT8 1024 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 WDR24Q96S15 920 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 OSBPL9Q96SU4 736 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 NAP1L3Q99457 506 aaPredicted RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 NAPGQ99747 312 aaPredicted RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 FAM118BQ9BPY3 351 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 MGME1Q9BQP7 344 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 FRMD8P1Q9BZ68 369 aaPredicted RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CPEB1Q9BZB8 566 aaKnown RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 POLR1EQ9GZS1 481 aaKnown RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 SEMA4AQ9H3S1 761 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 ATP13A3Q9H7F0 1226 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 CCDC177Q9NQR7 707 aaPredicted RBP5.1□□□□□ -1.59
CLIP1-217ENST00000543205 FBXL12Q9NXK8 326 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 AMACRQ9UHK6 382 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 RPS6KA6Q9UK32 745 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 SARDHQ9UL12 918 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 SNX12Q9UMY4 172 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 PKD1L2Q7Z442 2459 aa5.1□□□□□ -1.59
CLIP1-217ENST00000543205 LOC107983988A0A1B0GUW6 1196 aaPredicted RBP5.09□□□□□ -1.59
CLIP1-217ENST00000543205 TCRBV7S2A1N4TA0A589 114 aa5.09□□□□□ -1.59
CLIP1-217ENST00000543205 MUSKO15146 869 aa5.09□□□□□ -1.59
CLIP1-217ENST00000543205 INSIG1O15503 277 aa5.09□□□□□ -1.59
CLIP1-217ENST00000543205 HTRA2O43464 458 aaPredicted RBP5.09□□□□□ -1.59
CLIP1-217ENST00000543205 ERAL1O75616 437 aaKnown RBP5.09□□□□□ -1.59
CLIP1-217ENST00000543205 HLA-DQB2P05538 268 aa5.09□□□□□ -1.59
CLIP1-217ENST00000543205 UGT2B4P06133 528 aa5.09□□□□□ -1.59
CLIP1-217ENST00000543205 ALOX15P16050 662 aaPredicted RBP5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms