RNA–Protein interactions for RNA: ENST00000540904.1

SNHG1-215, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 5

Gene SNHG1, Length 594 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-215ENST00000540904 PTPRBP23467 1997 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 CCDC187A0A096LP49 1063 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 A0A1W2PNU3 283 aaPredicted RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 PMS2P1A4D2B8 440 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 SDR42E2A6NKP2 422 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 CCDC188H7C350 402 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 CD3EAPO15446 510 aaKnown RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 DUX1O43812 170 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 OR1I1O60431 355 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 BRINP1O60477 761 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 AP2A2O94973 939 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 VAPBO95292 243 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 CAPNS1P04632 268 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 SLC35G4P0C7Q5 338 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 MLNP12872 115 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 HOXB3P14651 431 aaPredicted RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 TYRP1P17643 537 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 MPSTP25325 297 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 CCKBRP32239 447 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 CSF2RBP32927 897 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 PPARGP37231 505 aaPredicted RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 LSSP48449 732 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 CFHR1Q03591 330 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 ZFP36L1Q07352 338 aaKnown RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 SEMA3AQ14563 771 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 ITIH4Q14624 930 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 RPE65Q16518 533 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 AARS2Q5JTZ9 985 aaKnown RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 RNASEH2BQ5TBB1 312 aaKnown RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 IZUMO3Q5VZ72 239 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 PACS1Q6VY07 963 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 TMEM26Q6ZUK4 368 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 SYDE1Q6ZW31 735 aaPredicted RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 RAB11FIP2Q7L804 512 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 NAT8LQ8N9F0 302 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 NCSTNQ92542 709 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 C16orf45Q96MC5 204 aaPredicted RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 C12orf66Q96MD2 445 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 RUNDC3BQ96NL0 473 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 KRT12Q99456 494 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 TRIM56Q9BRZ2 755 aaKnown RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 TRIM51Q9BSJ1 452 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 POLR1BQ9H9Y6 1135 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 MRM3Q9HC36 420 aaKnown RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 SLC40A1Q9NP59 571 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 IMP3Q9NV31 184 aaKnown RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 TMEM9Q9P0T7 183 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 MARCH4Q9P2E8 410 aaPredicted RBP9.04□□□□□ -0.96
SNHG1-215ENST00000540904 ACSL5Q9ULC5 683 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 MAD1L1Q9Y6D9 718 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 PRSS21Q9Y6M0 314 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 ASXL3Q9C0F0 2248 aa9.04□□□□□ -0.96
SNHG1-215ENST00000540904 PLXNB3Q9ULL4 1909 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 IGHV5-10-1A0A0J9YXX1 117 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 C17orf113A0A1B0GUU1 675 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 MAGEB16A2A368 324 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 LILRA5A6NI73 299 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 GOLGA8KD6RF30 607 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 GOLGA8TH3BQL2 631 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 TMX2-CTNND1H3BSU7 103 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 TAF4O00268 1085 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 QSOX1O00391 747 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 DNALI1O14645 258 aaPredicted RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 TTI1O43156 1089 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 UBXN7O94888 489 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 FTH1P02794 183 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 OR56A5P0C7T3 313 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 JMJD7P0C870 316 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 MTHFD1P11586 935 aaKnown RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 HGFP14210 728 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 AMD1P17707 334 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 ITGB6P18564 788 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 PAMP19021 973 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 ARNTP27540 789 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 MAGEA3P43357 314 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 PREPP48147 710 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 TTPAP49638 278 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 EPHA4P54764 986 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 PDAP1Q13442 181 aaKnown RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 SQSTM1Q13501 440 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 DHX34Q14147 1143 aaKnown RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 GPR18Q14330 331 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 KRT33BQ14525 404 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 BRD3Q15059 726 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 CLPPQ16740 277 aaPredicted RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 DUS1LQ6P1R4 473 aaKnown RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 ZNF449Q6P9G9 518 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 WDR74Q6RFH5 385 aaPredicted RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 XKR5Q6UX68 686 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 NAPRTQ6XQN6 538 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 ZNF574Q6ZN55 896 aaPredicted RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 PCGF5Q86SE9 256 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 PROSER1Q86XN7 944 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 JAMLQ86YT9 394 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 SLITRK4Q8IW52 837 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 RBM12BQ8IXT5 1001 aaKnown RBP9.03□□□□□ -0.96
SNHG1-215ENST00000540904 FBXO39Q8N4B4 442 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 RCBTB1Q8NDN9 531 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 OR4D9Q8NGE8 314 aa9.03□□□□□ -0.96
SNHG1-215ENST00000540904 GPR150Q8NGU9 434 aa9.03□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 33.2 ms