RNA–Protein interactions for RNA: ENST00000540798.5

RTN3-210, Transcript of reticulon 3, humanhuman

TSL 1 (best) BASIC

Gene RTN3, Length 3,124 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-210ENST00000540798 PFDN4Q9NQP4 134 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 ZDHHC3Q9NYG2 299 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 ALPK3Q96L96 1907 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 NUP210Q8TEM1 1887 aaPredicted RBP13.57□□□□□ -0.24
RTN3-210ENST00000540798 A0A1W2PQ67 120 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 TCRBV3S1A0A5B6 114 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 NR5A2O00482 541 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 FGBP02675 491 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 PABPC1P11940 636 aaKnown RBP13.57□□□□□ -0.24
RTN3-210ENST00000540798 PTPN2P17706 415 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 BMPR1AP36894 532 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 ERVK-8P63133 956 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 B4GALNT1Q00973 533 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 TRAF3Q13114 568 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 GTF2H2Q13888 395 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 C18orf21Q32NC0 220 aaPredicted RBP13.57□□□□□ -0.24
RTN3-210ENST00000540798 SPATS1Q496A3 300 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 PRSS36Q5K4E3 855 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 ZDHHC20Q5W0Z9 365 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 GTF2H2CQ6P1K8 395 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 DPY19L3Q6ZPD9 716 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 Q6ZSR9 355 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 ZNF557Q8N988 423 aaPredicted RBP13.57□□□□□ -0.24
RTN3-210ENST00000540798 IRF7Q92985 503 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 FAM126AQ9BYI3 521 aaPredicted RBP13.57□□□□□ -0.24
RTN3-210ENST00000540798 NOL11Q9H8H0 719 aaKnown RBP13.57□□□□□ -0.24
RTN3-210ENST00000540798 TDP1Q9NUW8 608 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 MARK1Q9P0L2 795 aa13.57□□□□□ -0.24
RTN3-210ENST00000540798 ZBBXA8MT70 800 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 C1SP09871 688 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 CBSLP0DN79 551 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 CBSP35520 551 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 NSG1P42857 185 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 AQP4P55087 323 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 GBX1Q14549 363 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 VPS26BQ4G0F5 336 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 TMEM102Q8N9M5 508 aaPredicted RBP13.56□□□□□ -0.24
RTN3-210ENST00000540798 NAT14Q8WUY8 206 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 BTBD9Q96Q07 612 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 ACOX2Q99424 681 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 TMEM79Q9BSE2 394 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 SPHK2Q9NRA0 654 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 CXXC1Q9P0U4 656 aaPredicted RBP13.56□□□□□ -0.24
RTN3-210ENST00000540798 SLC4A7Q9Y6M7 1214 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 ASPDHA6ND91 283 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 RHDQ02161 417 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 RALGDSQ12967 914 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 C6orf136Q5SQH8 315 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 PLPP4Q5VZY2 271 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 SPPL3Q8TCT6 385 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 LRCH3Q96II8 777 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 RAD9AQ99638 391 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 PCDHAC1Q9H158 963 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 HEBP1Q9NRV9 189 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 RIC8BQ9NVN3 520 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 ZIM2Q9NZV7 527 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 EPS15L1Q9UBC2 864 aa13.56□□□□□ -0.24
RTN3-210ENST00000540798 A0A1W2PP18 115 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 MAGEA13PA6NCF6 341 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 NEDD8-MDP1E9PL57 170 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 EIF3FO00303 357 aaPredicted RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 MAP3K13O43283 966 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 RFPL2O75678 378 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 RHOP08100 348 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 UQCRBP14927 111 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 ITGB6P18564 788 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 CDYL2Q8N8U2 506 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 RHBDF1Q96CC6 855 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 TEX37Q96LM6 180 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 TLR9Q9NR96 1032 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 SLCO3A1Q9UIG8 710 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 CCL27Q9Y4X3 112 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 TSPAN11A1L157 253 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 NME4O00746 187 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 EEDO75530 441 aaKnown RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 TRIM16O95361 564 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 S100BP04271 92 aaPredicted RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 HSD17B1P14061 328 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 TCN1P20061 433 aaPredicted RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 MAGEA10P43363 369 aaPredicted RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 SLC7A2P52569 658 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 NME5P56597 212 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 PPIGQ13427 754 aaKnown RBP eCLIP13.55□□□□□ -0.24
RTN3-210ENST00000540798 PHKG1Q16816 387 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 ATP13A5Q4VNC0 1218 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 ARHGAP15Q53QZ3 475 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 CDKL4Q5MAI5 379 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 MFSD4BQ5TF39 518 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 TMEM215Q68D42 235 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 ELMSAN1Q6PJG2 1045 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 LEMD2Q8NC56 503 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 ADCY4Q8NFM4 1077 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 OR4F6Q8NGB9 312 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 OR2A12Q8NGT7 310 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 ULK4Q96C45 1275 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 CDK15Q96Q40 435 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 UHRF1Q96T88 793 aaPredicted RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 BBS2Q9BXC9 721 aa13.55□□□□□ -0.24
RTN3-210ENST00000540798 NSUN3Q9H649 340 aaKnown RBP13.55□□□□□ -0.24
RTN3-210ENST00000540798 ZDHHC6Q9H6R6 413 aa13.55□□□□□ -0.24
Retrieved 100 of 20,778 RNA–protein pairs in 75.7 ms