RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 ABOP16442 354 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 ZNF7P17097 686 aaPredicted RBP8.91□□□□□ -0.98
USP28-205ENST00000537706 MST1P26927 711 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 GABRB2P47870 512 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 LRRC66Q68CR7 880 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 CRTC3Q6UUV7 619 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 Q6ZPB1 254 aaPredicted RBP8.91□□□□□ -0.98
USP28-205ENST00000537706 LRRTM4Q86VH4 590 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 CLYBLQ8N0X4 340 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 OR1L3Q8NH93 324 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 ZFPM2Q8WW38 1151 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 NTAN1Q96AB6 310 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 MCCC1Q96RQ3 725 aaPredicted RBP8.91□□□□□ -0.98
USP28-205ENST00000537706 AGAP2Q99490 1192 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 VKORC1Q9BQB6 163 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 CLSTN2Q9H4D0 955 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 ACP6Q9NPH0 428 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 PPT2Q9UMR5 302 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 NEU3Q9UQ49 428 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 PCYT1BQ9Y5K3 369 aaPredicted RBP8.91□□□□□ -0.98
USP28-205ENST00000537706 AP1M2Q9Y6Q5 423 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 DOCK4Q8N1I0 1966 aa8.91□□□□□ -0.98
USP28-205ENST00000537706 OR52A4PA6NMU1 304 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 HAX1O00165 279 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 ZNF749O43361 778 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 PROM1O43490 865 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 USP1O94782 785 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 TSPAN12O95859 305 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 LY6G6DO95868 133 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 UNGP13051 313 aaPredicted RBP8.9□□□□□ -0.98
USP28-205ENST00000537706 CTPS1P17812 591 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 IGFBP2P18065 325 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 MMP11P24347 488 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 HTR7P34969 479 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 TNFSF10P50591 281 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 EPHB1P54762 984 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 LRRC63Q05C16 580 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 PLA2G4EQ3MJ16 856 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 STRADAQ7RTN6 431 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 SLFN11Q7Z7L1 901 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 RNF214Q8ND24 703 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 SIMC1Q8NDZ2 872 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 TMEM158Q8WZ71 300 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 OR2AG1Q9H205 316 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 MRM3Q9HC36 420 aaKnown RBP8.9□□□□□ -0.98
USP28-205ENST00000537706 KCNJ16Q9NPI9 418 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 TXLNGQ9NUQ3 528 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 PKD2L2Q9NZM6 624 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 KIAA1468Q9P260 1216 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 PCDHA7Q9UN72 937 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 CSPG4Q6UVK1 2322 aa8.9□□□□□ -0.98
USP28-205ENST00000537706 MATN2O00339 956 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 PRRG2O14669 202 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 SLCO2B1O94956 709 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 PGLSO95336 258 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 LCA5LO95447 670 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 HOXD4P09016 255 aaPredicted RBP8.9□□□□□ -0.99
USP28-205ENST00000537706 MSL3P1P0C860 447 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 ATXN8OSP0DMR3 200 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 ZNF8P17098 575 aaPredicted RBP8.9□□□□□ -0.99
USP28-205ENST00000537706 RPL10P27635 214 aaKnown RBP8.9□□□□□ -0.99
USP28-205ENST00000537706 PAPOLAP51003 745 aaKnown RBP8.9□□□□□ -0.99
USP28-205ENST00000537706 BPIFB4P59827 614 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 CACNG1Q06432 222 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 IL10RBQ08334 325 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 RALGPS1Q5JS13 557 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 TMEM211Q6ICI0 200 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 RFLNAQ6ZTI6 216 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 THAP3Q8WTV1 239 aaPredicted RBP8.9□□□□□ -0.99
USP28-205ENST00000537706 CEP63Q96MT8 703 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 PSKH2Q96QS6 385 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 NUDCD1Q96RS6 583 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 NEUROD4Q9HD90 331 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 C1GALT1Q9NS00 363 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 ATXN10Q9UBB4 475 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 TMEM59LQ9UK28 342 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 ZNF835Q9Y2P0 537 aa8.9□□□□□ -0.99
USP28-205ENST00000537706 FAM237BA0A1B0GVD1 139 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 GSAPA4D1B5 854 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 KCNJ13O60928 360 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 ZRANB2O95218 330 aaKnown RBP eCLIP8.89□□□□□ -0.991e-6■■■■■ 42
USP28-205ENST00000537706 PIM1P11309 404 aaPredicted RBP8.89□□□□□ -0.99
USP28-205ENST00000537706 DESP17661 470 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 ITGAXP20702 1163 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 TNFAIP3P21580 790 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 FDXRP22570 491 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 STC1P52823 247 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 TPI1P60174 286 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 LBRQ14739 615 aaKnown RBP8.89□□□□□ -0.99
USP28-205ENST00000537706 RBBP7Q16576 425 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 ZNF569Q5MCW4 686 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 NAPRTQ6XQN6 538 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 WFDC11Q8NEX6 87 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 NSMCE1Q8WV22 266 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 HAS2Q92819 552 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 CELF6Q96J87 481 aaKnown RBP8.89□□□□□ -0.99
USP28-205ENST00000537706 ZNF599Q96NL3 588 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 FAM83DQ9H4H8 585 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 LRRC19Q9H756 370 aa8.89□□□□□ -0.99
USP28-205ENST00000537706 TRIM39Q9HCM9 518 aa8.89□□□□□ -0.99
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms