RNA–Protein interactions for RNA: ENST00000535607.5

USP28-202, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 683 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-202ENST00000535607 NXNQ6DKJ4 435 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 NEPROQ6NW34 567 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 GPR142Q7Z601 462 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 PLEKHH3Q7Z736 793 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 WDR49Q8IV35 697 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 HERC6Q8IVU3 1022 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 AQP12AQ8IXF9 295 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 SFRP1Q8N474 314 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TMCO5AQ8N6Q1 288 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 FAM47BQ8NA70 645 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ANKRD52Q8NB46 1076 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TXNDC5Q8NBS9 432 aaKnown RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 RNF169Q8NCN4 708 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 RASSF5Q8WWW0 418 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 JPH3Q8WXH2 748 aaPredicted RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 TFAP2CQ92754 450 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 LPPQ93052 612 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 POP5Q969H6 163 aaKnown RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 TBRG4Q969Z0 631 aaKnown RBP eCLIP6.55□□□□□ -1.36
USP28-202ENST00000535607 TAMM41Q96BW9 452 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ROPN1LQ96C74 230 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 RCN3Q96D15 328 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 CCDC126Q96EE4 140 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 TEKT5Q96M29 485 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 NSMCE3Q96MG7 304 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 COG8Q96MW5 612 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 RNF157Q96PX1 679 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 SORT1Q99523 831 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 HOPXQ9BPY8 73 aaPredicted RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 HEPHQ9BQS7 1158 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 NEURL2Q9BR09 285 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ADPGKQ9BRR6 497 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 WDR83Q9BRX9 315 aaKnown RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 DCUN1D5Q9BTE7 237 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 SLC25A23Q9BV35 468 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 NPLQ9BXD5 320 aaPredicted RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 PORCNQ9H237 461 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 RAD21L1Q9H4I0 556 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 RPF2Q9H7B2 306 aaKnown RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 GPN2Q9H9Y4 310 aaPredicted RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 LRRC4Q9HBW1 653 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 MRM3Q9HC36 420 aaKnown RBP6.55□□□□□ -1.36
USP28-202ENST00000535607 ZBTB26Q9HCK0 441 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 OLAHQ9NV23 265 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 SLC38A7Q9NVC3 462 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 HESX1Q9UBX0 185 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 PSME2Q9UL46 239 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 KIAA1257Q9ULG3 409 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ERVK-11Q9UQG0 969 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 RNF11Q9Y3C5 154 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 STYXL1Q9Y6J8 313 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 MGAMO43451 1857 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 ARID2Q68CP9 1835 aa6.55□□□□□ -1.36
USP28-202ENST00000535607 SMCHD1A6NHR9 2005 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 TCRBV3S1A0A5B6 114 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 TYW5A2RUC4 315 aaKnown RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 ISPDA4D126 451 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 TRIM64BA6NI03 449 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 CXorf49A8MYA2 514 aaPredicted RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 H0YAE9 185 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 ZNF195O14628 629 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 TNPO2O14787 897 aaKnown RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 SLC22A1O15245 554 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 CLOCKO15516 846 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 PHGDHO43175 533 aaKnown RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 TPD52L2O43399 206 aaKnown RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 PRAMEF4O60810 478 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 RNASEH2AO75792 299 aaKnown RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 DDHD2O94830 711 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 KLHL18O94889 574 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 OXSR1O95747 527 aaPredicted RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 PIGRP01833 764 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 KRT6AP02538 564 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 KRT6BP04259 564 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 ERBB2P04626 1255 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 GPIP06744 558 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 GSTT2P0CG29 244 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 GSTT2BP0CG30 244 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 TGFB3P10600 412 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 PF4V1P10720 104 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 UMPSP11172 480 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 HOXB6P17509 224 aaKnown RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 ICAM3P32942 547 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 RFC1P35251 1148 aaPredicted RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 CAPGP40121 348 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 MTNR1BP49286 362 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 HLCSP50747 726 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 NDST2P52849 883 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 C1QTNF8P60827 252 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 STX1BP61266 288 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 PRAMEP78395 509 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 GAD2Q05329 585 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 NIPAL4Q0D2K0 466 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 MERTKQ12866 999 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 TRAF2Q12933 501 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 SEMA5AQ13591 1074 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 NFE2Q16621 373 aaPredicted RBP6.54□□□□□ -1.36
USP28-202ENST00000535607 UGP2Q16851 508 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 UAP1L1Q3KQV9 507 aa6.54□□□□□ -1.36
USP28-202ENST00000535607 NHSL2Q5HYW2 709 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms