RNA–Protein interactions for RNA: ENST00000534647.1

CTNND1-238, Transcript of catenin delta 1, human

TSL 5

Gene CTNND1, Length 866 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CTNND1-238	ENST00000534647	SSR1	P43307	286 aa	Known RBP	11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	CAPZB	P47756	277 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	SCTR	P47872	440 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	LEPR	P48357	1165 aa	Known RBP	11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	GDF10	P55107	478 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	SH3BP2	P78314	561 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	ERV3-1	Q14264	604 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	ASTE1	Q2TB18	679 aa	Predicted RBP	11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	ASB18	Q6ZVZ8	466 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	C11orf96	Q7Z7L8	435 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	TRIM48	Q8IWZ4	208 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	TEX19	Q8NA77	164 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	CCNY	Q8ND76	341 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	STAMBPL1	Q96FJ0	436 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	SLC41A2	Q96JW4	573 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	TGM7	Q96PF1	710 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	RNF157	Q96PX1	679 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	VPS35	Q96QK1	796 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	GPR87	Q9BY21	358 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	OSGEPL1	Q9H4B0	414 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	UVRAG	Q9P2Y5	699 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	TLK1	Q9UKI8	766 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	NENF	Q9UMX5	172 aa		11.33	□□□□□ -0.6
CTNND1-238	ENST00000534647	KCNK1	O00180	336 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	EIF1AY	O14602	144 aa	Known RBP	11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	MTSS1	O43312	755 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	KIF1C	O43896	1103 aa	Known RBP	11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	PEX14	O75381	377 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	CDK14	O94921	469 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	KDELR1	P24390	212 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	ARHGAP25	P42331	645 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	SEPHS1	P49903	392 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	TAS2R40	P59535	323 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	CDK18	Q07002	472 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	ZBTB17	Q13105	803 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	SEMA5A	Q13591	1074 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	GPR18	Q14330	331 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	INSC	Q1MX18	579 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	ZNF648	Q5T619	568 aa	Predicted RBP	11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	CACHD1	Q5VU97	1274 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	NT5DC3	Q86UY8	548 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	PPP1R3B	Q86XI6	285 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	KMT5C	Q86Y97	462 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	LURAP1L	Q8IV03	231 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	RASGRP3	Q8IV61	690 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	PLD5	Q8N7P1	536 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	BRSK1	Q8TDC3	778 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	SEC16B	Q96JE7	1060 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	ALS2CR12	Q96Q35	445 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	BRD8	Q9H0E9	1235 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	SLC25A51	Q9H1U9	297 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	PDE7B	Q9NP56	450 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	MLXIPL	Q9NP71	852 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	LHX9	Q9NQ69	397 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	PRDM9	Q9NQV7	894 aa		11.32	□□□□□ -0.6
CTNND1-238	ENST00000534647	TEX15	Q9BXT5	2789 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	BSN	Q9UPA5	3926 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	PIPSL	A2A3N6	862 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	CTAGE9	A4FU28	777 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	PDZK1P1	A8MUH7	402 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	PJA2	O43164	708 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	KATNA1	O75449	491 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	RASSF9	O75901	435 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	URI1	O94763	535 aa	Predicted RBP	11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	PDGFA	P04085	211 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	S100B	P04271	92 aa	Predicted RBP	11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	HOXB1	P14653	301 aa	Predicted RBP	11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	BPI	P17213	487 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	VCL	P18206	1134 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	RPL10	P27635	214 aa	Known RBP	11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	HMGCL	P35914	325 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	NAP1L1	P55209	391 aa	Known RBP	11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	DMPK	Q09013	629 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	DNASE1L3	Q13609	305 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	GALNT3	Q14435	633 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	C4orf48	Q5BLP8	95 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	SLC9A4	Q6AI14	798 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	KLHL35	Q6PF15	583 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	CRTC3	Q6UUV7	619 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	SLC35F6	Q8N357	371 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	GALNT11	Q8NCW6	608 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	ZFPM2	Q8WW38	1151 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	THAP4	Q8WY91	577 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	RSC1A1	Q92681	617 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	CXorf40B	Q96DE9	158 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	NAPG	Q99747	312 aa	Predicted RBP	11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	GPR63	Q9BZJ6	419 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	TWSG1	Q9GZX9	223 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	ARFGAP3	Q9NP61	516 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	IGF2BP1	Q9NZI8	577 aa	Known RBP eCLIP	11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	TMPRSS11E	Q9UL52	423 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	SHOC2	Q9UQ13	582 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	VPS9D1	Q9Y2B5	631 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	ZNF711	Q9Y462	761 aa		11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647	PCDHGA9	Q9Y5G4	932 aa	Known RBP	11.31	□□□□□ -0.6
CTNND1-238	ENST00000534647		A0A0U1RQJ8	604 aa		11.3	□□□□□ -0.6
CTNND1-238	ENST00000534647	MACROD2	A1Z1Q3	448 aa		11.3	□□□□□ -0.6
CTNND1-238	ENST00000534647	CDC14C	A4D256	554 aa		11.3	□□□□□ -0.6
CTNND1-238	ENST00000534647	C3orf70	A6NLC5	250 aa	Predicted RBP	11.3	□□□□□ -0.6
CTNND1-238	ENST00000534647	OR52A4P	A6NMU1	304 aa		11.3	□□□□□ -0.6

Retrieved 100 of 20,778 RNA–protein pairs in 41.4 ms