RNA–Protein interactions for RNA: ENST00000531924.1

VPS28-215, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 3

Gene VPS28, Length 695 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-215ENST00000531924 NFE2L1Q14494 772 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 GSE1Q14687 1217 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 LARP7Q4G0J3 582 aaKnown RBP eCLIP14.43□□□□□ -0.1
VPS28-215ENST00000531924 CRTC2Q53ET0 693 aaPredicted RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 DNTTIP2Q5QJE6 756 aaKnown RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 C11orf63Q6NUN7 778 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 BBS12Q6ZW61 710 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 CDKL3Q8IVW4 592 aaPredicted RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 CCDC170Q8IYT3 715 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 KLHL6Q8WZ60 621 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 RAB33BQ9H082 229 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 GBA3Q9H227 469 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 FAM8A1Q9UBU6 413 aa14.43□□□□□ -0.1
VPS28-215ENST00000531924 AAR2Q9Y312 384 aaKnown RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 MRPS18BQ9Y676 258 aaKnown RBP14.43□□□□□ -0.1
VPS28-215ENST00000531924 MYO18BQ8IUG5 2567 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 PIPSLA2A3N6 862 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 KLHL33A6NCF5 533 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 C5orf60A6NFR6 353 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 APOC4-APOC2K7ER74 178 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 GPR39O43194 453 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 APOC2P02655 101 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 MTHFD1P11586 935 aaKnown RBP14.42□□□□□ -0.1
VPS28-215ENST00000531924 FGF5P12034 268 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 RBL1P28749 1068 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 MARCKSL1P49006 195 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 COPS2P61201 443 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 PDE1BQ01064 536 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 ACY1Q03154 408 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 ERV3-1Q14264 604 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 TAF1AQ15573 450 aaPredicted RBP14.42□□□□□ -0.1
VPS28-215ENST00000531924 SKIDA1Q1XH10 827 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 ATP1A1-AS1Q5TC04 95 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 DARS2Q6PI48 645 aaKnown RBP14.42□□□□□ -0.1
VPS28-215ENST00000531924 FAM83HQ6ZRV2 1179 aaPredicted RBP14.42□□□□□ -0.1
VPS28-215ENST00000531924 BPHLQ86WA6 291 aaPredicted RBP14.42□□□□□ -0.1
VPS28-215ENST00000531924 GPR150Q8NGU9 434 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 ABHD17AQ96GS6 310 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 CALR3Q96L12 384 aaKnown RBP14.42□□□□□ -0.1
VPS28-215ENST00000531924 C12orf66Q96MD2 445 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 PPP1R2P1Q96PQ5 205 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 CD180Q99467 661 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 WWP1Q9H0M0 922 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 ASB8Q9H765 288 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 SMOXQ9NWM0 555 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 HRASLS2Q9NWW9 162 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 CRLS1Q9UJA2 301 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 ANAPC2Q9UJX6 822 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 ACSL5Q9ULC5 683 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 ARL5AQ9Y689 179 aa14.42□□□□□ -0.1
VPS28-215ENST00000531924 CFAP20Q9Y6A4 193 aaKnown RBP14.42□□□□□ -0.1
VPS28-215ENST00000531924 CDC14CA4D256 554 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 MGAT4DA6NG13 374 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 CFAP99D6REC4 459 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 MKRN2OSH3BPM6 223 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 CRTAMO95727 393 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 PYGMP11217 842 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 F8A1P23610 371 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 EIF3EP60228 445 aaKnown RBP14.41□□□□□ -0.1
VPS28-215ENST00000531924 PTPRCAPQ14761 206 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 LACTB2Q53H82 288 aaPredicted RBP14.41□□□□□ -0.1
VPS28-215ENST00000531924 TMTC4Q5T4D3 741 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 METRNLQ641Q3 311 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 OOSP2Q86WS3 158 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 KMT5CQ86Y97 462 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 TC2NQ8N9U0 490 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 OR4K2Q8NGD2 314 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 KRT35Q92764 455 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 APOL2Q9BQE5 337 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 TWSG1Q9GZX9 223 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 C10orf88Q9H8K7 445 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 TFR2Q9UP52 801 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 POLHQ9Y253 713 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 COLEC10Q9Y6Z7 277 aa14.41□□□□□ -0.1
VPS28-215ENST00000531924 IGHV5-51A0A0C4DH38 117 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 TLCD2A6NGC4 264 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 KCNN4O15554 427 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 MAP3K7O43318 606 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 SRP72O76094 671 aaKnown RBP14.4□□□□□ -0.1
VPS28-215ENST00000531924 LCA5LO95447 670 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 POLBP06746 335 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 FOLR1P15328 257 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 CASRP41180 1078 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 PPP1CAP62136 330 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 HSD11B2P80365 405 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 OTUD4Q01804 1114 aaKnown RBP14.4□□□□□ -0.1
VPS28-215ENST00000531924 PRKAA1Q13131 559 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 DNASE1L3Q13609 305 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 KCNAB1Q14722 419 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 ANKRD20A2Q5SQ80 823 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 ANKRD20A1Q5TYW2 823 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 ANKRD20A3Q5VUR7 823 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 ZNF449Q6P9G9 518 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 CFAP206Q8IYR0 622 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 OR2L2Q8NH16 312 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 ACTL9Q8TC94 416 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 ZFPM2Q8WW38 1151 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 ULK4Q96C45 1275 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 FCRL4Q96PJ5 515 aa14.4□□□□□ -0.1
VPS28-215ENST00000531924 MAP3K3Q99759 626 aa14.4□□□□□ -0.1
Retrieved 100 of 20,778 RNA–protein pairs in 42.5 ms