RNA–Protein interactions for RNA: ENST00000527797.6

VPS28-208, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 1,609 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-208ENST00000527797 CCNYL1Q8N7R7 359 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 PPP4R1Q8TF05 950 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 ASZ1Q8WWH4 475 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 PHF21BQ96EK2 531 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 TEX101Q9BY14 249 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 C20orf27Q9GZN8 174 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 WDR26Q9H7D7 661 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 TBC1D17Q9HA65 648 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 CYP4F12Q9HCS2 524 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 NCKIPSDQ9NZQ3 722 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 TMCO1Q9UM00 188 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 UBXN8O00124 270 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 STK25O00506 426 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 NUAK1O60285 661 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 LYPLA1O75608 230 aaPredicted RBP20.67■□□□□ 0.9
VPS28-208ENST00000527797 TGDSO95455 350 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 MTHFD2P13995 350 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 SF3A3Q12874 501 aaKnown RBP eCLIP20.67■□□□□ 0.93e-6■■■■□ 25.6
VPS28-208ENST00000527797 OVGP1Q12889 678 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 ANO7Q6IWH7 933 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 SEC16BQ96JE7 1060 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 FAM126AQ9BYI3 521 aaPredicted RBP20.67■□□□□ 0.9
VPS28-208ENST00000527797 PHPT1Q9NRX4 125 aaPredicted RBP20.67■□□□□ 0.9
VPS28-208ENST00000527797 GPR34Q9UPC5 381 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 TMEM98Q9Y2Y6 226 aa20.67■□□□□ 0.9
VPS28-208ENST00000527797 LRRK1Q38SD2 2015 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 RAD51BO15315 384 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 HSPA4LO95757 839 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 IGLV3-19P01714 112 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 MPC1LP0DKB6 136 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 GFAPP14136 432 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 ZNF8P17098 575 aaPredicted RBP20.66■□□□□ 0.9
VPS28-208ENST00000527797 IMPDH1P20839 514 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 CFAP157Q5JU67 520 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 FRA10AC1Q70Z53 315 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 TRAPPC5Q8IUR0 188 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 CACNA2D3Q8IZS8 1091 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 DRC3Q9H069 523 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 C2orf42Q9NWW7 574 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 EYSQ5T1H1 3165 aa20.66■□□□□ 0.9
VPS28-208ENST00000527797 UNC80Q8N2C7 3258 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 SLC31A1O15431 190 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 NPHS1O60500 1241 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 GPC4O75487 556 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 RCN2Q14257 317 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 PFKFB4Q16877 469 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 SYTL3Q4VX76 610 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 DOK6Q6PKX4 331 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 FBXO39Q8N4B4 442 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 PTGR2Q8N8N7 351 aaPredicted RBP20.65■□□□□ 0.9
VPS28-208ENST00000527797 CCDC197Q8NCU1 140 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 CNDP1Q96KN2 507 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 TMEM237Q96Q45 408 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 HHIPQ96QV1 700 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 LGR4Q9BXB1 951 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 TRIM55Q9BYV6 548 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 KLHL14Q9P2G3 628 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 OR1A2Q9Y585 309 aa20.65■□□□□ 0.9
VPS28-208ENST00000527797 SNX2O60749 519 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 LILRB5O75023 590 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 SLCO2B1O94956 709 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 SEMA4FO95754 770 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 GSTM1P09488 218 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 IGFALSP35858 605 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 SERPINB5P36952 375 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 GSTM4Q03013 218 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 TMEM31Q5JXX7 168 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 SBSNQ6UWP8 590 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 NEK10Q6ZWH5 1172 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 TMEM159Q96B96 161 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 L3HYPDHQ96EM0 354 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 THOC1Q96FV9 657 aaKnown RBP20.64■□□□□ 0.9
VPS28-208ENST00000527797 LINC00615Q96LM1 132 aaPredicted RBP20.64■□□□□ 0.9
VPS28-208ENST00000527797 SORT1Q99523 831 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 NPHS2Q9NP85 383 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 NUDT4Q9NZJ9 180 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 CD274Q9NZQ7 290 aa20.64■□□□□ 0.9
VPS28-208ENST00000527797 KLK8O60259 260 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 MYCLP1P12525 358 aaPredicted RBP20.64■□□□□ 0.89
VPS28-208ENST00000527797 PBLDP30039 288 aaPredicted RBP20.64■□□□□ 0.89
VPS28-208ENST00000527797 OXTRP30559 389 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 HERVK_113P63132 956 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 TGFBIQ15582 683 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 ZNF678Q5SXM1 525 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 CRTC3Q6UUV7 619 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 ANKS4BQ8N8V4 417 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 DENND6BQ8NEG7 585 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 SKA2Q8WVK7 121 aaPredicted RBP20.64■□□□□ 0.89
VPS28-208ENST00000527797 CLDN23Q96B33 292 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 MOCOSQ96EN8 888 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 ERVK-6Q9BXR3 956 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 ACSS2Q9NR19 701 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 FAM8A1Q9UBU6 413 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 MUTYHQ9UIF7 546 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 ADAMTS6Q9UKP5 1117 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 CYP8B1Q9UNU6 501 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 CDYLQ9Y232 598 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 DNAJC16Q9Y2G8 782 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 OARD1Q9Y530 152 aa20.64■□□□□ 0.89
VPS28-208ENST00000527797 C17orf113A0A1B0GUU1 675 aa20.63■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms