RNA–Protein interactions for RNA: ENST00000526044.5

USP48-211, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 3

Gene USP48, Length 549 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-211ENST00000526044 PPP1R2P3Q6NXS1 205 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 DENND1BQ6P3S1 775 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 ALKBH5Q6P6C2 394 aaKnown RBP4.59□□□□□ -1.67
USP48-211ENST00000526044 TLDC1Q6P9B6 456 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 FBXO38Q6PIJ6 1188 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 ZNF813Q6ZN06 617 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 RTL10Q7L3V2 364 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 MAATS1Q7Z4T9 603 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 ERICH1Q86X53 443 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 NUP93Q8N1F7 819 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 MSANTD4Q8NCY6 345 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 SLC22A17Q8WUG5 538 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 HDAC7Q8WUI4 952 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 SLC35F5Q8WV83 523 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 GRAMD1AQ96CP6 724 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 C18orf8Q96DM3 657 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 TRIM44Q96DX7 344 aaPredicted RBP4.59□□□□□ -1.67
USP48-211ENST00000526044 SMARCD1Q96GM5 515 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 VCPIP1Q96JH7 1222 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 PPP1R13BQ96KQ4 1090 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 SGCZQ96LD1 299 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 HSFY1Q96LI6 401 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 ZNF830Q96NB3 372 aaPredicted RBP4.59□□□□□ -1.67
USP48-211ENST00000526044 KCNK16Q96T55 309 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 EIF3CQ99613 913 aaKnown RBP4.59□□□□□ -1.67
USP48-211ENST00000526044 SYT11Q9BT88 431 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 PLEKHA4Q9H4M7 779 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 SYNCQ9H7C4 482 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 CSNK1G1Q9HCP0 422 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 TM7SF3Q9NS93 570 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 NOCTQ9UK39 431 aaKnown RBP4.59□□□□□ -1.67
USP48-211ENST00000526044 FZD4Q9ULV1 537 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 DGKBQ9Y6T7 804 aa4.59□□□□□ -1.67
USP48-211ENST00000526044 TNRC18O15417 2968 aaPredicted RBP4.59□□□□□ -1.68
USP48-211ENST00000526044 PTPRDP23468 1912 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 PLXNA3P51805 1871 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 OR2W5A6NFC9 320 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 F8VP50 259 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 CBFA2T3O75081 653 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 LCA5LO95447 670 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 VNN2O95498 520 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 VIPP01282 170 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 H2AFZP0C0S5 128 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 PRR35P0CG20 571 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 TMIGD3P0DMS9 266 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 PECAM1P16284 738 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 PTPN2P17706 415 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 KELP23276 732 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 EPHB2P29323 1055 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 NSFP46459 744 aaKnown RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 GABRB2P47870 512 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 NRIP1P48552 1158 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 HSPA7P48741 367 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 CLCN4P51793 760 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 GALCP54803 685 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 CCZ1BP86790 482 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 CCZ1P86791 482 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 NSUN2Q08J23 767 aaKnown RBP eCLIP4.58□□□□□ -1.68
USP48-211ENST00000526044 TWF1Q12792 350 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 PLD1Q13393 1074 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 ZNF268Q14587 947 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 MTF1Q14872 753 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 MFSD13AQ14CX5 517 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 DUSP6Q16828 381 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 MPEG1Q2M385 716 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 ARHGAP15Q53QZ3 475 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 DGKKQ5KSL6 1271 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 PPM1LQ5SGD2 360 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 LIN9Q5TKA1 542 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 NAA35Q5VZE5 725 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 OR6B2Q6IFH4 312 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 PMF1Q6P1K2 205 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 RANBP10Q6VN20 620 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 RAD9BQ6WBX8 426 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 CLEC20AQ6ZU45 233 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 H2AFVQ71UI9 128 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 DNAJB7Q7Z6W7 309 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 YTHDF3Q7Z739 585 aaKnown RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 ADGRD2Q7Z7M1 963 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 TMEM110Q86TL2 294 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 PIGZQ86VD9 579 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 TTC30AQ86WT1 665 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 PHF13Q86YI8 300 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 TMEM139Q8IV31 216 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 SIX6OS1Q8N1H7 587 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 GALNT16Q8N428 558 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 ZNF398Q8TD17 642 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 GDPD5Q8WTR4 605 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 SPATA17Q96L03 361 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 CEP295NLQ96MC4 621 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 SERINC2Q96SA4 455 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 CDCA3Q99618 268 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 SEPT5Q99719 369 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 NUDT22Q9BRQ3 303 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 QTRT1Q9BXR0 403 aaKnown RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 MIS12Q9H081 205 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 ISCUQ9H1K1 167 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 TTYH1Q9H313 450 aaPredicted RBP4.58□□□□□ -1.68
USP48-211ENST00000526044 LRRC4Q9HBW1 653 aa4.58□□□□□ -1.68
USP48-211ENST00000526044 DMAP1Q9NPF5 467 aaPredicted RBP4.58□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 27.8 ms