RNA–Protein interactions for RNA: ENST00000525688.5

CD44-220, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 560 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-220ENST00000525688 SH2D4AQ9H788 454 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 MVB12BQ9H7P6 319 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 IL1RAPL2Q9NP60 686 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 CD93Q9NPY3 652 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 PFDN4Q9NQP4 134 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 POLE3Q9NRF9 147 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 DDX43Q9NXZ2 648 aaKnown RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 PLK2Q9NYY3 685 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 NDRG3Q9UGV2 375 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 AURKCQ9UQB9 309 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 MTMR6Q9Y217 621 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 NOSIPQ9Y314 301 aaKnown RBP4.76□□□□□ -1.65
CD44-220ENST00000525688 RAP2CQ9Y3L5 183 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 COL18A1P39060 1754 aa4.76□□□□□ -1.65
CD44-220ENST00000525688 COL5A2P05997 1499 aaPredicted RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 ATP8B3O60423 1300 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 IGSF1Q8N6C5 1336 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 TRAV34A0A0B4J273 112 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 SMIM35A0A1B0GVV1 85 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 hCG_1809904A0A1W2PP81 198 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 A0A1W2PPE2 198 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 A0A1W2PR64 198 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 URADA6NGE7 173 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 FAM90A8PA6NJQ4 464 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 HSPB2A8KAH6 182 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 CDRT15L2A8MXV6 281 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 GPR89AB7ZAQ6 455 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 KLK8O60259 260 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 HNRNPCL1O60812 293 aaKnown RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 NUDT3O95989 172 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 IFNB1P01574 187 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 SLPIP03973 132 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 FAM90A13PP0C7W8 464 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 FAM90A24PP0C7X0 464 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 GPR89BP0CG08 455 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 PRR35P0CG20 571 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 AGAP20933 346 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 CASP3P42574 277 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 LMAN1P49257 510 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 CDH8P55286 799 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 GRIK3Q13003 919 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 RUNX2Q13950 521 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 HSPB2Q16082 182 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 INAQ16352 499 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 MEP1BQ16820 701 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 KRT24Q2M2I5 525 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 SOWAHCQ53LP3 525 aaPredicted RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 CXorf66Q5JRM2 361 aaPredicted RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 RAB41Q5JT25 222 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 C9orf152Q5JTZ5 239 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 C6orf10Q5SRN2 563 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 ARHGAP11AQ6P4F7 1023 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 SUSD1Q6UWL2 747 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 ZNF793Q6ZN11 406 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 GBP6Q6ZN66 633 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 LINC00696Q6ZRV3 163 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 CHST9Q7L1S5 443 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 RD3Q7Z3Z2 195 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 ADGRG3Q86Y34 549 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 SPATA2LQ8IUW3 424 aaPredicted RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 RBFAQ8N0V3 343 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 RTL3Q8N8U3 475 aaKnown RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 LRRC57Q8N9N7 239 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 OR6C4Q8NGE1 309 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 SETD6Q8TBK2 473 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 SLC5A11Q8WWX8 675 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 GCNAQ96QF7 691 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 KLHL31Q9H511 634 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 PDZD7Q9H5P4 517 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 AAMDCQ9H7C9 122 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 TCP11L1Q9NUJ3 509 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 ANKRD10Q9NXR5 420 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 CTNNAL1Q9UBT7 734 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 CLIP2Q9UDT6 1046 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 FAM153AQ9UHL3 310 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 AAR2Q9Y312 384 aaKnown RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 MRPL11Q9Y3B7 192 aaKnown RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 LSM4Q9Y4Z0 139 aaKnown RBP4.75□□□□□ -1.65
CD44-220ENST00000525688 POMT1Q9Y6A1 747 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 ABCC6O95255 1503 aa4.75□□□□□ -1.65
CD44-220ENST00000525688 KIF7Q2M1P5 1343 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 NSD3Q9BZ95 1437 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 FAM237AA0A1B0GTK4 181 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 A0A1W2PRV1 198 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 TYW5A2RUC4 315 aaKnown RBP4.74□□□□□ -1.65
CD44-220ENST00000525688 GAGE12JA6NER3 117 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 GLOD5A6NK44 160 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 E5RJQ4 531 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 KIF2AO00139 706 aaPredicted RBP4.74□□□□□ -1.65
CD44-220ENST00000525688 SNAP23O00161 211 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 HCRTR2O43614 444 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 ATG13O75143 517 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 RBMXL2O75526 392 aaKnown RBP4.74□□□□□ -1.65
CD44-220ENST00000525688 MTRF1O75570 445 aaKnown RBP4.74□□□□□ -1.65
CD44-220ENST00000525688 REC8O95072 547 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 C22orf31O95567 290 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 PAHP00439 452 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 HMOX1P09601 288 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 ITGAXP20702 1163 aa4.74□□□□□ -1.65
CD44-220ENST00000525688 SAT1P21673 171 aa4.74□□□□□ -1.65
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms