RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 SNHG28P0DPA3 235 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 TGFBR2P37173 567 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 RPS5P46782 204 aaKnown RBP11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 HOXC5Q00444 222 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 CHRNB3Q05901 458 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 FAM160B1Q5W0V3 765 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 TIGD7Q6NT04 549 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 SYVN1Q86TM6 617 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 FBXO30Q8TB52 745 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 DNAJA4Q8WW22 397 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 RXFP2Q8WXD0 754 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 NCLNQ969V3 563 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 MFSD14AQ96MC6 490 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 ZNF578Q96N58 590 aaPredicted RBP11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 PIP5K1AQ99755 562 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 PCDHB16Q9NRJ7 776 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 PCDHB14Q9Y5E9 798 aa11.9□□□□□ -0.5
LIMCH1-213ENST00000511496 TRAV6A0A075B6T7 132 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 A0A0B4J293 547 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ZNF487B1APH4 448 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 YKT6O15498 198 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 PSMD10O75832 226 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 CFBP00751 764 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 C1QBP02746 253 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 HSMCR30P0CW71 290 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ACVR2AP27037 513 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 TNFSF8P32971 234 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 CTSKP43235 329 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 WNT7BP56706 349 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 TNK1Q13470 666 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 IL18R1Q13478 541 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 RIN1Q13671 783 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 FAM83EQ2M2I3 478 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 HEATR6Q6AI08 1181 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 KLHL17Q6TDP4 642 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 HACD2Q6Y1H2 254 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 SCARA5Q6ZMJ2 495 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 DPH6Q7L8W6 267 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 P3H2Q8IVL5 708 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 RNF31Q96EP0 1072 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 UBXN10Q96LJ8 280 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 GPR78Q96P69 363 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ZNF416Q9BWM5 594 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ING3Q9NXR8 418 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ABCD2Q9UBJ2 740 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 LRP5O75197 1615 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 FER1L6Q2WGJ9 1857 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 SPDYE2BA6NHP3 402 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 FXYD1O00168 92 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 MITFO75030 526 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 NDUFS6O75380 124 aaKnown RBP11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 UGT2B17O75795 530 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ITGBL1O95965 494 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 SPDYE6P0CI01 402 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 UMPSP11172 480 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ACADMP11310 421 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 CPT1AP50416 773 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 UGT2B15P54855 530 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 SOX10P56693 466 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 SPDYE2Q495Y8 402 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 PRSS36Q5K4E3 855 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 STEAP4Q687X5 459 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 PRMT9Q6P2P2 845 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 XKRXQ6PP77 449 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 CLEC14AQ86T13 490 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 GPD1LQ8N335 351 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC5A11Q8WWX8 675 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 COQ8BQ96D53 544 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 PHF21BQ96EK2 531 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 VPS39Q96JC1 886 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 RIBC2Q9H4K1 309 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 TRIM45Q9H8W5 580 aaPredicted RBP11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 EMC3Q9P0I2 261 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 PCDHGB1Q9Y5G3 927 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 CLDN24A6NM45 220 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 FGF18O76093 207 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 APOA4P06727 396 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 HTR7P34969 479 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 RAP1GAPP47736 663 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 CAPZA2P47755 286 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 CDH13P55290 713 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 AAK1Q2M2I8 961 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 UGT3A2Q3SY77 523 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 PM20D2Q8IYS1 436 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 AADATQ8N5Z0 425 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ITFG1Q8TB96 612 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 USP7Q93009 1102 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 SLC4A9Q96Q91 983 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 ITPAQ9BY32 194 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 OSBPL2Q9H1P3 480 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 AMBNQ9NP70 447 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 SLAMF8Q9P0V8 285 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 C3orf18Q9UK00 162 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 FBXO10Q9UK96 956 aa11.89□□□□□ -0.51
LIMCH1-213ENST00000511496 TRAV19A0A0A6YYK7 116 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 RAB19A4D1S5 217 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 B4DXG7 233 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 PRPSAP2O60256 369 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 PLATP00750 562 aa11.88□□□□□ -0.51
LIMCH1-213ENST00000511496 ALDOCP09972 364 aaKnown RBP11.88□□□□□ -0.51
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms