RNA–Protein interactions for RNA: ENST00000509769.5

USP53-205, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 1 (best)

Gene USP53, Length 4,803 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-205ENST00000509769 DPY19L1Q2PZI1 675 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GXYLT1Q4G148 440 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 EARS2Q5JPH6 523 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 FAM69AQ5T7M9 428 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RAP1GAP2Q684P5 730 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TMEM132EQ6IEE7 984 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RGMBQ6NW40 437 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SMARCD3Q6STE5 483 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 FAM180AQ6UWF9 173 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF782Q6ZMW2 699 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF367Q7RTV3 350 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 C6orf120Q7Z4R8 191 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC51BQ86UW2 128 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CHSY1Q86X52 802 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GRAMD2AQ8IUY3 354 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OFCC1Q8IZS5 231 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GPC2Q8N158 579 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 C4orf33Q8N1A6 199 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MARVELD2Q8N4S9 558 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 DNAAF1Q8NEP3 725 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OR4Q3Q8NH05 313 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OR5K1Q8NHB7 308 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZFPM2Q8WW38 1151 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 BRI3BPQ8WY22 251 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 COG8Q96MW5 612 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MEIS3Q99687 375 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CIPCQ9C0C6 399 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 UNC93B1Q9H1C4 597 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 VCX2Q9H322 139 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CDC42EP4Q9H3Q1 356 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 POMKQ9H5K3 350 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TUT1Q9H6E5 874 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 ZNF395Q9H8N7 513 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 FN3KRPQ9HA64 309 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 LMCD1Q9NZU5 365 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 KLHL42Q9P2K6 505 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PRELID3BQ9Y3B1 194 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PCDHGA4Q9Y5G9 962 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PCDHA11Q9Y5I1 949 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PTPRJQ12913 1337 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SLIT3O75094 1523 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SCN4AP35499 1836 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 A0A0D9SG52 128 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ESYT3A0FGR9 886 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ANKRD33BA6NCL7 494 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MAGEB17A8MXT2 336 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 INMT-MINDY4F8WBC2 141 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 DDX3YO15523 660 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 GPRIN2O60269 458 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PRAMEF2O60811 474 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ABCB7O75027 752 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 LRRN2O75325 713 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SERPINB7O75635 380 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MTA2O94776 668 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TOXO94900 526 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 FBXO21O94952 628 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 STAU1O95793 577 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 ALPPP05187 535 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 SRPRAP08240 638 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 NCF1P14598 390 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 SLC7A1P30825 629 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RFX3P48380 749 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NR2C2P49116 596 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TAF6P49848 677 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CCR4P51679 360 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 TKTL1P51854 596 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NDST1P52848 882 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RGS8P57771 180 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 CSTF1Q05048 431 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 GALNT1Q10472 559 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 KCNH2Q12809 1159 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 LAPTM5Q13571 262 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CRY1Q16526 586 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 AP5B1Q2VPB7 878 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GLRA4Q5JXX5 417 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 GLYATQ6IB77 296 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NCEH1Q6PIU2 408 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZC3H14Q6PJT7 736 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 RFPL4BQ6ZWI9 263 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NOXA1Q86UR1 476 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PLD6Q8N2A8 252 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 STK40Q8N2I9 435 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RELL2Q8NC24 303 aaPredicted RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 RBM15BQ8NDT2 890 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 LFNGQ8NES3 379 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 OR2L8Q8NGY9 312 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NSUN6Q8TEA1 469 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 PIGBQ92521 554 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 BAP1Q92560 729 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 BORCS7Q96B45 105 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ASIC4Q96FT7 647 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 MAELQ96JY0 434 aaKnown RBP3.54□□□□□ -1.84
USP53-205ENST00000509769 CPXM1Q96SM3 734 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 PNKPQ96T60 521 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 CHP1Q99653 195 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 RUSC1Q9BVN2 902 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 DNTTIP1Q9H147 329 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 ZDHHC6Q9H6R6 413 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 NLKQ9UBE8 527 aa3.54□□□□□ -1.84
USP53-205ENST00000509769 LIMD1Q9UGP4 676 aa3.54□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms