RNA–Protein interactions for RNA: ENST00000493662.6

MSH5-SAPCD1-207, Transcript of MSH5-SAPCD1 readthrough (NMD candidate), humanhuman

APPRIS P5 TSL 1 (best) BASIC

Gene MSH5-SAPCD1, Length 3,991 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH5-SAPCD1-207ENST00000493662 CLDN11O75508 207 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CLPXO76031 633 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HOXD8P13378 290 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LPOP22079 712 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 VARSP26640 1264 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MYBPC1Q00872 1141 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RUNX1T1Q06455 604 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ACOX1Q15067 660 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ADGRF1Q5T601 910 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SMYD5Q6GMV2 418 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TUBA3EQ6PEY2 450 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 Q6ZVU0 165 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZNF534Q76KX8 674 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GET4Q7L5D6 327 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GRASPQ7Z6J2 395 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZC3HC1Q86WB0 502 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FNDC5Q8NAU1 212 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DMRTB1Q96MA1 342 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KCNA7Q96RP8 456 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 C20orf27Q9GZN8 174 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ACTR8Q9H981 624 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 EGFL7Q9UHF1 273 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLCO3A1Q9UIG8 710 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CEPT1Q9Y6K0 416 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZNFX1Q9P2E3 1918 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 A0A1W2PQ72 361 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DHRS12A0PJE2 317 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 E7ESA3 106 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 INSIG1O15503 277 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 H2AFYO75367 372 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RGRP47804 291 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 WDR45BQ5MNZ6 344 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OGFRL1Q5TC84 451 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LYSMD3Q7Z3D4 306 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MRPL10Q7Z7H8 261 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC22A16Q86VW1 577 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OR9I1Q8NGQ6 314 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MCFD2Q8NI22 146 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DNAJB14Q8TBM8 379 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KLK6Q92876 244 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 OSBPL2Q9H1P3 480 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FBRSL1Q9HCM7 1045 aaKnown RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SPAG4Q9NPE6 437 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 POLR3BQ9NW08 1133 aaPredicted RBP10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC25A13Q9UJS0 675 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PADI4Q9UM07 663 aa10.62□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SPTBN2O15020 2390 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 M0QZQ0 153 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SORBS2O94875 1100 aaKnown RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRAMEF1O95521 474 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RBP1P09455 135 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ATF4P18848 351 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ATF6P18850 670 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IGFBP4P22692 258 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ALDH4A1P30038 563 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GDF5P43026 501 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 MSLNQ13421 630 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KCNJ8Q15842 424 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZC3H7AQ8IWR0 971 aaKnown RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FCRL5Q96RD9 977 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ATG10Q9H0Y0 220 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PCDHAC1Q9H158 963 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CDH19Q9H159 772 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KLQ9UEF7 1012 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 KRBA1A5PL33 1030 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SNTNA6NMZ2 147 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FAM47E-STBD1D6RA91 191 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CLDN7O95471 211 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DBTP11182 482 aaKnown RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ITIH1P19827 911 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 PRKCHP24723 683 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC6A4P31645 630 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 HNF4AP41235 474 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RGS4P49798 205 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 AIF1P55008 147 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 RAB14P61106 215 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ABRQ12979 859 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TNFAIP8L3Q5GJ75 292 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 FGD3Q5JSP0 725 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 DEPDC1Q5TB30 811 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 IL27RAQ6UWB1 636 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 GPSM1Q86YR5 675 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CLIP4Q8N3C7 705 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC15A4Q8N697 577 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 BCL7CQ8WUZ0 217 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SNX19Q92543 992 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZHX1-C8orf76Q96EF9 292 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TBCDQ9BTW9 1192 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC25A23Q9BV35 468 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 VTI1BQ9UEU0 232 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NIPSNAP3AQ9UFN0 247 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 LOC101059915A0A1B0GWI6 518 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 ZNF840PA6NDX5 716 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TFECO14948 347 aaPredicted RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 TBX1O43435 398 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 NDST3O95803 873 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CNPP09543 421 aaKnown RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SLC2A4P14672 509 aa10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 CCT3P49368 545 aaKnown RBP10.61□□□□□ -0.71
MSH5-SAPCD1-207ENST00000493662 SGSHP51688 502 aa10.61□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms