RNA–Protein interactions for RNA: ENST00000485955.1

VPS41-213, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 571 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-213ENST00000485955 PCGF3Q3KNV8 242 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 RARS2Q5T160 578 aaKnown RBP3.54□□□□□ -1.84
VPS41-213ENST00000485955 SNX30Q5VWJ9 437 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 KIAA0930Q6ICG6 404 aaPredicted RBP3.54□□□□□ -1.84
VPS41-213ENST00000485955 KLHL35Q6PF15 583 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 GALNT13Q8IUC8 556 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 HACE1Q8IYU2 909 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 MAPK1IP1LQ8NDC0 245 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 OR2T12Q8NG77 320 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 UCMAQ8WVF2 138 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 CMTM3Q96MX0 182 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 NUDCD1Q96RS6 583 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 RHNO1Q9BSD3 238 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 PLK3Q9H4B4 646 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 MYH16Q9H6N6 1097 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 SLA2Q9H6Q3 261 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 DIAPH3Q9NSV4 1193 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 PAG1Q9NWQ8 432 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 KCNJ14Q9UNX9 436 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 SPATA31D1Q6ZQQ2 1576 aa3.54□□□□□ -1.84
VPS41-213ENST00000485955 TDRD9Q8NDG6 1382 aaKnown RBP3.53□□□□□ -1.84
VPS41-213ENST00000485955 TP53BP1Q12888 1972 aaPredicted RBP3.53□□□□□ -1.84
VPS41-213ENST00000485955 A8MZ25 164 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 CLIC2O15247 247 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 TMCC2O75069 709 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 GPC4O75487 556 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 NADKO95544 446 aaPredicted RBP3.53□□□□□ -1.84
VPS41-213ENST00000485955 NGFP01138 241 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 FRMD6-AS1P0C7T7 363 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 LAMP2P13473 410 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 LIFP15018 202 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 TMEM11P17152 192 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 CDH2P19022 906 aaPredicted RBP3.53□□□□□ -1.84
VPS41-213ENST00000485955 IKQ13123 557 aaPredicted RBP3.53□□□□□ -1.84
VPS41-213ENST00000485955 KRT32Q14532 448 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 ZDHHC20Q5W0Z9 365 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 ZNF790Q6PG37 636 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 DENND5BQ6ZUT9 1274 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 SH2D5Q6ZV89 423 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 IKBIPQ70UQ0 350 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 PLD3Q8IV08 490 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 WDTC1Q8N5D0 677 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 OLIG1Q8TAK6 271 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 SLC47A1Q96FL8 570 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 SLC22A12Q96S37 553 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 ASCL2Q99929 193 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 SRSF8Q9BRL6 282 aaKnown RBP3.53□□□□□ -1.84
VPS41-213ENST00000485955 DENND2DQ9H6A0 471 aaPredicted RBP3.53□□□□□ -1.84
VPS41-213ENST00000485955 MIOSQ9NXC5 875 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 MRPS28Q9Y2Q9 187 aaKnown RBP3.53□□□□□ -1.84
VPS41-213ENST00000485955 PYGO1Q9Y3Y4 419 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 CMAHPQ9Y471 501 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 KIF13AQ9H1H9 1805 aa3.53□□□□□ -1.84
VPS41-213ENST00000485955 STK36Q9NRP7 1315 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 KRTAP16-1A8MUX0 517 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 PSMD14O00487 310 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 GPR137BO60478 399 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 ACP2P11117 423 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 CKMT2P17540 419 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 GABRB1P18505 474 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 NMBRP28336 390 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 PPARGP37231 505 aaPredicted RBP3.52□□□□□ -1.85
VPS41-213ENST00000485955 CAMPP49913 170 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 MFAP5Q13361 173 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 FFAR4Q5NUL3 377 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 SARM1Q6SZW1 724 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 HCAR2Q8TDS4 363 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 USP6NLQ92738 828 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 ART5Q96L15 291 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 ZNF582Q96NG8 517 aaPredicted RBP3.52□□□□□ -1.85
VPS41-213ENST00000485955 DDOQ99489 341 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 HGH1Q9BTY7 390 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 UNC45AQ9H3U1 944 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 KAT14Q9H8E8 782 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 FGF22Q9HCT0 170 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 INTS10Q9NVR2 710 aaKnown RBP3.52□□□□□ -1.85
VPS41-213ENST00000485955 C2orf42Q9NWW7 574 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 TMEM181Q9P2C4 612 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 CACNG5Q9UF02 275 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 MMP24Q9Y5R2 645 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 MYH15Q9Y2K3 1946 aa3.52□□□□□ -1.85
VPS41-213ENST00000485955 WDR62O43379 1518 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 A0A1W2PR77 199 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 PLEKHD1A6NEE1 506 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 OR6C76A6NM76 312 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 MYO1GB0I1T2 1018 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 HS6ST1O60243 411 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 USO1O60763 962 aaKnown RBP3.51□□□□□ -1.85
VPS41-213ENST00000485955 MBD4O95243 580 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 ACTN1P12814 892 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 MAN1A1P33908 653 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 CLK1P49759 484 aaKnown RBP3.51□□□□□ -1.85
VPS41-213ENST00000485955 IRX1P78414 480 aaPredicted RBP3.51□□□□□ -1.85
VPS41-213ENST00000485955 GAGE2BQ13066 116 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 ITGA9Q13797 1035 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 DLG2Q15700 870 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 KRT71Q3SY84 523 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 GAGE2EQ4V326 116 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 LCE3CQ5T5A8 94 aa3.51□□□□□ -1.85
VPS41-213ENST00000485955 FAM109BQ6ICB4 259 aaPredicted RBP3.51□□□□□ -1.85
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms