RNA–Protein interactions for RNA: ENST00000484528.1

USP40-215, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2

Gene USP40, Length 933 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-215ENST00000484528 LPOP22079 712 aaPredicted RBP21.1■□□□□ 0.97
USP40-215ENST00000484528 FECHP22830 423 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 COPS2P61201 443 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 KCNC4Q03721 635 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 LONRF2Q1L5Z9 754 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 DEFB109BQ30KR1 87 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 ANKRD20A2Q5SQ80 823 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 ANKRD20A1Q5TYW2 823 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 ANKRD20A3Q5VUR7 823 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 CCDC110Q8TBZ0 833 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 CATSPER2Q96P56 530 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 EFHD1Q9BUP0 239 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 WWP1Q9H0M0 922 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 ASB8Q9H765 288 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 REXO2Q9Y3B8 237 aaKnown RBP21.1■□□□□ 0.97
USP40-215ENST00000484528 SPTBP11277 2137 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 BSNQ9UPA5 3926 aa21.1■□□□□ 0.97
USP40-215ENST00000484528 IGHV5-51A0A0C4DH38 117 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 C2orf81A6NN90 581 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 TERTO14746 1132 aaKnown RBP21.09■□□□□ 0.97
USP40-215ENST00000484528 MTHFD1P11586 935 aaKnown RBP21.09■□□□□ 0.97
USP40-215ENST00000484528 TCN2P20062 427 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 ADRA1AP35348 466 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 DLSTP36957 453 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 MAP7Q14244 749 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 KCNAB1Q14722 419 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 TAF1AQ15573 450 aaPredicted RBP21.09■□□□□ 0.97
USP40-215ENST00000484528 DARS2Q6PI48 645 aaKnown RBP21.09■□□□□ 0.97
USP40-215ENST00000484528 C6orf15Q6UXA7 325 aaPredicted RBP21.09■□□□□ 0.97
USP40-215ENST00000484528 RANBP10Q6VN20 620 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 MICALCLQ6ZW33 695 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 ACRBPQ8NEB7 543 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 OR13C4Q8NGS5 318 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 KLHL6Q8WZ60 621 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 STAMBPL1Q96FJ0 436 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 INSM2Q96T92 566 aaPredicted RBP21.09■□□□□ 0.97
USP40-215ENST00000484528 FERMT1Q9BQL6 677 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 EPHA6Q9UF33 1036 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 CROTQ9UKG9 612 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 PTPN13Q12923 2485 aa21.09■□□□□ 0.97
USP40-215ENST00000484528 UBR5O95071 2799 aaPredicted RBP21.08■□□□□ 0.97
USP40-215ENST00000484528 CCL22O00626 93 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 SPAG6O75602 509 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 SRP72O76094 671 aaKnown RBP21.08■□□□□ 0.97
USP40-215ENST00000484528 NELFEP18615 380 aaKnown RBP21.08■□□□□ 0.97
USP40-215ENST00000484528 ZNF75DP51815 510 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 TMPRSS15P98073 1019 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 SPARCL1Q14515 664 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 CERS6Q6ZMG9 384 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 SPDYE1Q8NFV5 336 aaPredicted RBP21.08■□□□□ 0.97
USP40-215ENST00000484528 ALG3Q92685 438 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 C12orf66Q96MD2 445 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 PANX2Q96RD6 677 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 MAP3K3Q99759 626 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 RAB33BQ9H082 229 aa21.08■□□□□ 0.97
USP40-215ENST00000484528 DNMT3AQ9Y6K1 912 aaPredicted RBP21.08■□□□□ 0.97
USP40-215ENST00000484528 STK10O94804 968 aaKnown RBP21.07■□□□□ 0.96
USP40-215ENST00000484528 IPO7O95373 1038 aaKnown RBP21.07■□□□□ 0.96
USP40-215ENST00000484528 TIAF1O95411 115 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 RWDD2BP57060 319 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 TUBB3Q13509 450 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 PRPSAP1Q14558 356 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 IL11RAQ14626 422 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 METRNLQ641Q3 311 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 RAD9BQ6WBX8 426 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 PPP1R3BQ86XI6 285 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 LILRA3Q8N6C8 439 aaPredicted RBP21.07■□□□□ 0.96
USP40-215ENST00000484528 SIDT2Q8NBJ9 832 aaKnown RBP21.07■□□□□ 0.96
USP40-215ENST00000484528 ZNF514Q96K75 400 aaPredicted RBP21.07■□□□□ 0.96
USP40-215ENST00000484528 SPATA13Q96N96 652 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 LACRTQ9GZZ8 138 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 FAM96AQ9H5X1 160 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 ZNF71Q9NQZ8 489 aaPredicted RBP21.07■□□□□ 0.96
USP40-215ENST00000484528 CRLS1Q9UJA2 301 aa21.07■□□□□ 0.96
USP40-215ENST00000484528 AAR2Q9Y312 384 aaKnown RBP21.07■□□□□ 0.96
USP40-215ENST00000484528 CCDC66A2RUB6 948 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 C5orf60A6NFR6 353 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 MGAT4DA6NG13 374 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 KATNA1O75449 491 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 POLBP06746 335 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 SLC35G4P0C7Q5 338 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 EBLN1P0CF75 366 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 PYGMP11217 842 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 FGF5P12034 268 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 FOLR1P15328 257 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 PTPN7P35236 360 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 ARCN1P48444 511 aaKnown RBP21.06■□□□□ 0.96
USP40-215ENST00000484528 XIAPP98170 497 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 MC1RQ01726 317 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 SKIDA1Q1XH10 827 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 DNTTIP2Q5QJE6 756 aaKnown RBP21.06■□□□□ 0.96
USP40-215ENST00000484528 KLHL35Q6PF15 583 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 TMTC1Q8IUR5 882 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 UBXN4Q92575 508 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 TBL1YQ9BQ87 522 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 EFR3BQ9Y2G0 817 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 FLNCQ14315 2725 aa21.06■□□□□ 0.96
USP40-215ENST00000484528 GRID2IPA4D2P6 1211 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 OR5K3A6NET4 321 aa21.05■□□□□ 0.96
USP40-215ENST00000484528 SGTAO43765 313 aa21.05■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 37.7 ms