RNA–Protein interactions for RNA: ENST00000483216.1

USP40-213, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 4

Gene USP40, Length 641 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-213ENST00000483216 ZNF852Q6ZMS4 543 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 KCTD8Q6ZWB6 473 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 CHST9Q7L1S5 443 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 CREBRFQ8IUR6 639 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 DCUN1D3Q8IWE4 304 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 ADGRF2Q8IZF7 708 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 TMTC2Q8N394 836 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 PDCL2Q8N4E4 241 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 TTC39CQ8N584 583 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 DMBX1Q8NFW5 382 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 POLR3CQ9BUI4 534 aaPredicted RBP5.69□□□□□ -1.5
USP40-213ENST00000483216 C1QTNF1Q9BXJ1 281 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 RAB6CQ9H0N0 254 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 RWDD1Q9H446 243 aaPredicted RBP5.69□□□□□ -1.5
USP40-213ENST00000483216 SDF2L1Q9HCN8 221 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 OGFRQ9NZT2 677 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 FBXL17Q9UF56 701 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 IQGAP3Q86VI3 1631 aa5.69□□□□□ -1.5
USP40-213ENST00000483216 KDM5CP41229 1560 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 ERBINQ96RT1 1412 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 ANKRD66B4E2M5 251 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 BUD23O43709 281 aaKnown RBP5.68□□□□□ -1.5
USP40-213ENST00000483216 FGF17O60258 216 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 TPM3P06753 285 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 AHRP35869 848 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 MSH2P43246 934 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 CTSCP53634 463 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 HYAL1Q12794 435 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 SIM2Q14190 667 aaPredicted RBP5.68□□□□□ -1.5
USP40-213ENST00000483216 MVPQ14764 893 aaKnown RBP5.68□□□□□ -1.5
USP40-213ENST00000483216 WDR43Q15061 677 aaKnown RBP eCLIP5.68□□□□□ -1.5
USP40-213ENST00000483216 KIAA0930Q6ICG6 404 aaPredicted RBP5.68□□□□□ -1.5
USP40-213ENST00000483216 RAD9BQ6WBX8 426 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 MEX3BQ6ZN04 569 aaKnown RBP5.68□□□□□ -1.5
USP40-213ENST00000483216 TPRG1Q6ZUI0 275 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 EPHX4Q8IUS5 362 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 CIARTQ8N365 385 aaPredicted RBP5.68□□□□□ -1.5
USP40-213ENST00000483216 OR52I2Q8NH67 350 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 PHF21AQ96BD5 680 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 MOAP1Q96BY2 351 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 UHRF2Q96PU4 802 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 SMC6Q96SB8 1091 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 MAF1Q9H063 256 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 MARCH4Q9P2E8 410 aaPredicted RBP5.68□□□□□ -1.5
USP40-213ENST00000483216 DBNLQ9UJU6 430 aaKnown RBP5.68□□□□□ -1.5
USP40-213ENST00000483216 NENFQ9UMX5 172 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 CMAHPQ9Y471 501 aa5.68□□□□□ -1.5
USP40-213ENST00000483216 USP47Q96K76 1375 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 TSPOAP1O95153 1857 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 MAGI2Q86UL8 1455 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 PLPP2O43688 288 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 SYNGR3O43761 229 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 CLTBP09497 229 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 ANOS1P23352 680 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 HRH2P25021 359 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 PON1P27169 355 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 PSMB10P40306 273 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 GARSP41250 739 aaKnown RBP5.67□□□□□ -1.5
USP40-213ENST00000483216 RPL24P83731 157 aaKnown RBP5.67□□□□□ -1.5
USP40-213ENST00000483216 SPOCK1Q08629 439 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 C19orf48Q6RUI8 117 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 USP43Q70EL4 1123 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 SLC5A8Q8N695 610 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 LINGO1Q96FE5 620 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 CCDC34Q96HJ3 373 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 GAD1Q99259 594 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 GFI1Q99684 422 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 FTOQ9C0B1 505 aaKnown RBP eCLIP5.67□□□□□ -1.5
USP40-213ENST00000483216 VPS33BQ9H267 617 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 BLOC1S4Q9NUP1 217 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 TXLNGQ9NUQ3 528 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 KLHL9Q9P2J3 617 aa5.67□□□□□ -1.5
USP40-213ENST00000483216 MAP3K4Q9Y6R4 1608 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 NEO1Q92859 1461 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 TMEM8BA6NDV4 472 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 PTGES3LE9PB15 166 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 ZNF217O75362 1048 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 IGHV4-39P01824 125 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 RB1P06400 928 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 HADHAP40939 763 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 MLLT10P55197 1068 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 PHEXP78562 749 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 KRTAP24-1Q3LI83 254 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 SIRPB2Q5JXA9 342 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 CCNYL2Q5T2Q4 361 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 TMEM198Q66K66 360 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 CLEC17AQ6ZS10 378 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 TRMT1LQ7Z2T5 733 aaKnown RBP5.66□□□□□ -1.5
USP40-213ENST00000483216 SLC24A4Q8NFF2 622 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 GSDMBQ8TAX9 411 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 PPP4R1Q8TF05 950 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 SYAP1Q96A49 352 aaPredicted RBP5.66□□□□□ -1.5
USP40-213ENST00000483216 SCRN2Q96FV2 425 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 TIGD1Q96MW7 591 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 ZNF583Q96ND8 569 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 SYNCQ9H7C4 482 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 TAAR2Q9P1P5 351 aa5.66□□□□□ -1.5
USP40-213ENST00000483216 RCC2Q9P258 522 aaKnown RBP5.66□□□□□ -1.5
USP40-213ENST00000483216 RTEL1-TNFRSF6BF6WH68 1400 aa5.65□□□□□ -1.5
USP40-213ENST00000483216 BCORL1Q5H9F3 1711 aa5.65□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms