RNA–Protein interactions for RNA: ENST00000478214.1

HMGA1-206, Transcript of high mobility group AT-hook 1, humanhuman

TSL 1 (best)

Gene HMGA1, Length 716 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1-206ENST00000478214 DDX47Q9H0S4 455 aaKnown RBP15.28■□□□□ 0.04
HMGA1-206ENST00000478214 ASCL3Q9NQ33 180 aa15.28■□□□□ 0.04
HMGA1-206ENST00000478214 POT1Q9NUX5 634 aa15.28■□□□□ 0.04
HMGA1-206ENST00000478214 SYBUQ9NX95 663 aa15.28■□□□□ 0.04
HMGA1-206ENST00000478214 PKD1L2Q7Z442 2459 aa15.28■□□□□ 0.04
HMGA1-206ENST00000478214 URB1O60287 2271 aaKnown RBP15.28■□□□□ 0.04
HMGA1-206ENST00000478214 KLHL33A6NCF5 533 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 DUX1O43812 170 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 AVILO75366 819 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 POLBP06746 335 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 NMBRP28336 390 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 RBMS1P29558 406 aaKnown RBP15.27■□□□□ 0.04
HMGA1-206ENST00000478214 LIMK2P53671 638 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 EPHA4P54764 986 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 PRAMEP78395 509 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 EIF3IQ13347 325 aaKnown RBP15.27■□□□□ 0.04
HMGA1-206ENST00000478214 ITIH4Q14624 930 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 C16orf72Q14CZ0 275 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 RPE65Q16518 533 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 KIF26BQ2KJY2 2108 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 IGF2-ASQ6U949 168 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 CES3Q6UWW8 571 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 RCBTB1Q8NDN9 531 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 SPDYE1Q8NFV5 336 aaPredicted RBP15.27■□□□□ 0.04
HMGA1-206ENST00000478214 GPR150Q8NGU9 434 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 HM13Q8TCT9 377 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 NCSTNQ92542 709 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 FGF11Q92914 225 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 TBRG4Q969Z0 631 aaKnown RBP eCLIP15.27■□□□□ 0.044e-6■■■■■ 48.1
HMGA1-206ENST00000478214 CCDC74BQ96LY2 380 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 ZNF578Q96N58 590 aaPredicted RBP15.27■□□□□ 0.04
HMGA1-206ENST00000478214 SLC46A1Q96NT5 459 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 UCK1Q9HA47 277 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 SLC40A1Q9NP59 571 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 TREX1Q9NSU2 369 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 ACSL5Q9ULC5 683 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 LOXL2Q9Y4K0 774 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 SAR1BQ9Y6B6 198 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 PRSS21Q9Y6M0 314 aa15.27■□□□□ 0.04
HMGA1-206ENST00000478214 DSPP15924 2871 aaKnown RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 GOLGA8MH3BSY2 632 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 OR1I1O60431 355 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 AP2A2O94973 939 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 TNFSF15O95150 251 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 TYRP1P17643 537 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 NSG1P42857 185 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 SARNPP82979 210 aaKnown RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 GPR18Q14330 331 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 SEMA3AQ14563 771 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 PPP1R7Q15435 360 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 ZNF658BQ4V348 819 aaPredicted RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 FASTKD1Q53R41 847 aaKnown RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 TMEM71Q6P5X7 295 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 PACS1Q6VY07 963 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 CAND1Q86VP6 1230 aaKnown RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 MPP5Q8N3R9 675 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 RMDN2Q96LZ7 410 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 DCBLD2Q96PD2 775 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 INSM2Q96T92 566 aaPredicted RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 DPYSL5Q9BPU6 564 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 CCM2Q9BSQ5 444 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 KIFC1Q9BW19 673 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 KCND1Q9NSA2 647 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 IMP3Q9NV31 184 aaKnown RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 OGFRQ9NZT2 677 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 MARCH4Q9P2E8 410 aaPredicted RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 PISDQ9UG56 409 aa15.26■□□□□ 0.03
HMGA1-206ENST00000478214 CFAP20Q9Y6A4 193 aaKnown RBP15.26■□□□□ 0.03
HMGA1-206ENST00000478214 ZFHX4Q86UP3 3567 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 C17orf113A0A1B0GUU1 675 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 SLC35G4P0C7Q5 338 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 JMJD7P0C870 316 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 THRAP10827 490 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 MTHFD1P11586 935 aaKnown RBP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 ITIH1P19827 911 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 ERVPABLB-1P60509 514 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 TRA2AQ13595 282 aaKnown RBP eCLIP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 SNAP47Q5SQN1 464 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 LYPLAL1Q5VWZ2 237 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 DUS1LQ6P1R4 473 aaKnown RBP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 WDR74Q6RFH5 385 aaPredicted RBP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 CERS6Q6ZMG9 384 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 LDB1Q86U70 411 aaPredicted RBP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 RBM12BQ8IXT5 1001 aaKnown RBP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 MCUQ8NE86 351 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 SNIP1Q8TAD8 396 aaKnown RBP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 JPH3Q8WXH2 748 aaPredicted RBP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 MFSD3Q96ES6 412 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 SGSM3Q96HU1 749 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 C12orf66Q96MD2 445 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 TTC1Q99614 292 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 CMKLR1Q99788 373 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 EPB41L1Q9H4G0 881 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 COG4Q9H9E3 785 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 VPS37BQ9H9H4 285 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 MRM3Q9HC36 420 aaKnown RBP15.25■□□□□ 0.03
HMGA1-206ENST00000478214 THSD1Q9NS62 852 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 CATSPERZQ9NTU4 200 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 PDP2Q9P2J9 529 aa15.25■□□□□ 0.03
HMGA1-206ENST00000478214 PCYOX1Q9UHG3 505 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 34.1 ms