RNA–Protein interactions for RNA: ENST00000469543.5

VIM-203, Transcript of vimentin, humanhuman

TSL 2

Gene VIM, Length 2,666 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIM-203ENST00000469543 HSD17B1P14061 328 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 BPIP17213 487 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 ERVK-8P63133 956 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 NFATC2Q13469 925 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 CHRNA6Q15825 494 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 AP5B1Q2VPB7 878 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 LARP7Q4G0J3 582 aaKnown RBP eCLIP18.81■□□□□ 0.6
VIM-203ENST00000469543 ADGRG5Q8IZF4 528 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 TMEM199Q8N511 208 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 FAM47BQ8NA70 645 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 OVCA2Q8WZ82 227 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 TMEM169Q96HH4 297 aa18.81■□□□□ 0.6
VIM-203ENST00000469543 KCTD14Q9BQ13 255 aaPredicted RBP18.81■□□□□ 0.6
VIM-203ENST00000469543 CKMP06732 381 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 RPL26P61254 145 aaKnown RBP18.8■□□□□ 0.6
VIM-203ENST00000469543 NR6A1Q15406 480 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 TXNDC11Q6PKC3 985 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 EGFL8Q99944 293 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 EFHD1Q9BUP0 239 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 IL21Q9HBE4 155 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 MAGEE1Q9HCI5 957 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 ZFP14Q9HCL3 533 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 DDX18Q9NVP1 670 aaKnown RBP18.8■□□□□ 0.6
VIM-203ENST00000469543 ARMC1Q9NVT9 282 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 SMOXQ9NWM0 555 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 ACTR3BQ9P1U1 418 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 INTS6Q9UL03 887 aaKnown RBP18.8■□□□□ 0.6
VIM-203ENST00000469543 VPS9D1Q9Y2B5 631 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 POLR3HQ9Y535 204 aaPredicted RBP18.8■□□□□ 0.6
VIM-203ENST00000469543 GABRR2P28476 465 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 PCSK6P29122 969 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 DEFB103AP81534 67 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 VEPH1Q14D04 833 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 CARM1Q86X55 608 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 DUS3LQ96G46 650 aaKnown RBP18.8■□□□□ 0.6
VIM-203ENST00000469543 ZNF382Q96SR6 550 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 ZNF696Q9H7X3 374 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 AGPAT4Q9NRZ5 378 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 CNOT11Q9UKZ1 510 aaKnown RBP18.8■□□□□ 0.6
VIM-203ENST00000469543 REV3LO60673 3130 aa18.8■□□□□ 0.6
VIM-203ENST00000469543 RNF103-CHMP3A0A140T963 221 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 NPIPB15A6NHN6 443 aaPredicted RBP18.79■□□□□ 0.6
VIM-203ENST00000469543 PCNAP12004 261 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 BMP2P12643 396 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 TLE2Q04725 743 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 SPATA19Q7Z5L4 167 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 BRINP2Q9C0B6 783 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 INSL5Q9Y5Q6 135 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 MAGED1Q9Y5V3 778 aaPredicted RBP18.79■□□□□ 0.6
VIM-203ENST00000469543 LSM1O15116 133 aaKnown RBP18.79■□□□□ 0.6
VIM-203ENST00000469543 PFDN6O15212 129 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 TEX28O15482 410 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 TRBC1P01850 177 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 PSMA4P25789 261 aaKnown RBP18.79■□□□□ 0.6
VIM-203ENST00000469543 BCL2L1Q07817 233 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 KRT80Q6KB66 452 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 SLC22A15Q8IZD6 547 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 GPR26Q8NDV2 337 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 CLHC1Q8NHS4 586 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 ZUFSPQ96AP4 578 aa18.79■□□□□ 0.6
VIM-203ENST00000469543 LIN28AQ9H9Z2 209 aaKnown RBP18.79■□□□□ 0.6
VIM-203ENST00000469543 DNMT3BQ9UBC3 853 aaKnown RBP18.79■□□□□ 0.6
VIM-203ENST00000469543 HEMK1Q9Y5R4 338 aaPredicted RBP18.79■□□□□ 0.6
VIM-203ENST00000469543 EEDO75530 441 aaKnown RBP18.78■□□□□ 0.6
VIM-203ENST00000469543 SLC2A4P14672 509 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 HRH2P25021 359 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 LMAN2Q12907 356 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 TRAF3Q13114 568 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 AARS2Q5JTZ9 985 aaKnown RBP18.78■□□□□ 0.6
VIM-203ENST00000469543 PPP4R4Q6NUP7 873 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 DNAJC14Q6Y2X3 702 aaPredicted RBP18.78■□□□□ 0.6
VIM-203ENST00000469543 MILR1Q7Z6M3 343 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 CMTM8Q8IZV2 173 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 RIN3Q8TB24 985 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 VOPP1Q96AW1 172 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 DGCR14Q96DF8 476 aaKnown RBP18.78■□□□□ 0.6
VIM-203ENST00000469543 FBXL20Q96IG2 436 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 HHIPL1Q96JK4 782 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 OSBPL11Q9BXB4 747 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 LATS2Q9NRM7 1088 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 CFAP97Q9P2B7 532 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 SUN2Q9UH99 717 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 STOML2Q9UJZ1 356 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 TRIM17Q9Y577 477 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 ST14Q9Y5Y6 855 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 ADARP55265 1226 aaKnown RBP18.78■□□□□ 0.6
VIM-203ENST00000469543 CDKN3Q16667 212 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 LCN8Q6JVE9 175 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 TBPL2Q6SJ96 375 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 CYP20A1Q6UW02 462 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 DLEU7Q6UYE1 221 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 OFCC1Q8IZS5 231 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 TSPAN14Q8NG11 270 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 TFAP2CQ92754 450 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 GPBP1L1Q9HC44 474 aaPredicted RBP18.78■□□□□ 0.6
VIM-203ENST00000469543 CD84Q9UIB8 345 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 TANC1Q9C0D5 1861 aa18.78■□□□□ 0.6
VIM-203ENST00000469543 VPS4BO75351 444 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 B3GALT4O96024 378 aa18.77■□□□□ 0.6
VIM-203ENST00000469543 CHRM1P11229 460 aaPredicted RBP18.77■□□□□ 0.6
Retrieved 100 of 20,778 RNA–protein pairs in 22.4 ms