RNA–Protein interactions for RNA: ENST00000468545.1

TMEM39A-204, Transcript of transmembrane protein 39A, humanhuman

TSL 4

Gene TMEM39A, Length 575 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM39A-204ENST00000468545 PCDHGA12O60330 932 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CACNG3O60359 315 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 TMEM127O75204 238 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ERLIN1O75477 346 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ZNF189O75820 626 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ANXA9O76027 345 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ALDH1A2O94788 518 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 TOX4O94842 621 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 TMEM63AO94886 807 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SEC31AO94979 1220 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PIGNO95427 931 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 IGSF6O95976 241 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PLATP00750 562 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 EGFP01133 1207 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PRKCGP05129 697 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 JUNP05412 331 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SERPINF2P08697 491 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 DLDP09622 509 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 LTA4HP09960 611 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 VSIG10L2P0DP72 767 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CTPS1P17812 591 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CR2P20023 1033 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 MGAT1P26572 445 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SLC8A1P32418 973 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 KIR2DL3P43628 341 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SERPINH1P50454 418 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 EPHB1P54762 984 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 DRG2P55039 364 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ARL4CP56559 192 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 WNT3AP56704 352 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 GEMIN4P57678 1058 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SNRPD1P62314 119 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SARNPP82979 210 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SEMG2Q02383 582 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CAV1Q03135 178 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 RAD51Q06609 339 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ZNF33AQ06730 810 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 BCL2L1Q07817 233 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 GRSF1Q12849 480 aaKnown RBP eCLIP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 MALLQ13021 153 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PDIA2Q13087 525 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 MPP3Q13368 585 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SEMA5AQ13591 1074 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CUL1Q13616 776 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 GALNT3Q14435 633 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 RFTN1Q14699 578 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ACAP2Q15057 778 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 BRD3Q15059 726 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PCBP2Q15366 365 aaKnown RBP eCLIP4.09□□□□□ -1.753e-10■□□□□ 9.5
TMEM39A-204ENST00000468545 SMAD1Q15797 465 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 MYLK3Q32MK0 819 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 POM121L1PQ3SYA9 428 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PREPLQ4J6C6 727 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 INO80DQ53TQ3 878 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 FNBP1LQ5T0N5 605 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CFAP58Q5T655 872 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 RNASEH2BQ5TBB1 312 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 HIBCHQ6NVY1 386 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CASC4Q6P4E1 433 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 NCEH1Q6PIU2 408 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CES3Q6UWW8 571 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ZDHHC24Q6UX98 284 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 TPRG1Q6ZUI0 275 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PRPF39Q86UA1 669 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CAMK1DQ8IU85 385 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ADHFE1Q8IWW8 467 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PALM2Q8IXS6 379 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 STK40Q8N2I9 435 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SH2D3CQ8N5H7 860 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 TEX26Q8N6G2 289 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 DDX51Q8N8A6 666 aaKnown RBP eCLIP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 NAT8LQ8N9F0 302 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 TERB1Q8NA31 727 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 DCAF4L2Q8NA75 395 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 LPCAT1Q8NF37 534 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ARRDC2Q8TBH0 407 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 UBLCP1Q8WVY7 318 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 FAM3CQ92520 227 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 JADE3Q92613 823 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 PRCCQ92733 491 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 EXOC4Q96A65 974 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 TTC17Q96AE7 1141 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 RMDN1Q96DB5 314 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 RTP4Q96DX8 246 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CFAP36Q96G28 342 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 OXNAD1Q96HP4 312 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 NUDCD1Q96RS6 583 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ACOX2Q99424 681 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 TBL1YQ9BQ87 522 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 POLR1EQ9GZS1 481 aaKnown RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SLC25A51Q9H1U9 297 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 GBA3Q9H227 469 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ZDHHC6Q9H6R6 413 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 C8orf33Q9H7E9 229 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 HAUS2Q9NVX0 235 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 ARGLU1Q9NWB6 273 aaPredicted RBP4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 THEGQ9P2T0 379 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 LHX3Q9UBR4 397 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 SCOCQ9UIL1 159 aa4.09□□□□□ -1.75
TMEM39A-204ENST00000468545 CHKBQ9Y259 395 aa4.09□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 26.6 ms