RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 CCNYL2Q5T2Q4 361 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ICE2Q659A1 982 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 KLHDC10Q6PID8 442 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 LRRTM4Q86VH4 590 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 SRMSQ9H3Y6 488 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 DNAJC28Q9NX36 388 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 USP3Q9Y6I4 520 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF780BQ9Y6R6 833 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 RHPN2P1A8MT19 583 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PI15O43692 258 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 RECQL5O94762 991 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 PFKLP17858 780 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CD70P32970 193 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 GNA13Q14344 377 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ZNHIT3Q15649 155 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 LSM12Q3MHD2 195 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 GPRC6AQ5T6X5 926 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ANXA8L1Q5VT79 327 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 KIAA0319Q5VV43 1072 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 GK5Q6ZS86 529 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 TMEM26Q6ZUK4 368 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 YTHDF3Q7Z739 585 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ZC3H7AQ8IWR0 971 aaKnown RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 EID3Q8N140 333 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 SCML4Q8N228 414 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 ZNF786Q8N393 782 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 FIBINQ8TAL6 211 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 NR1H4Q96RI1 486 aaPredicted RBP7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CCT7Q99832 543 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 CD248Q9HCU0 757 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 HEBP2Q9Y5Z4 205 aa7.31□□□□□ -1.24
SYNE1-213ENST00000448038 TTC34A8MYJ7 566 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 OR1F1O43749 312 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 NRP2O60462 931 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 POP7O75817 140 aaKnown RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 KRT75O95678 551 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 TRBC1P01850 177 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 FYNP06241 537 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 GNAZP19086 355 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 HNF1BP35680 557 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 EIF4HQ15056 248 aaKnown RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 PKDCCQ504Y2 493 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 CPTPQ5TA50 214 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 IL23RQ5VWK5 629 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 LHX8Q68G74 356 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 ERN2Q76MJ5 926 aaKnown RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 ARFGAP1Q8N6T3 406 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 B4GALNT2Q8NHY0 566 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 LRIG1Q96JA1 1093 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 LMLNQ96KR4 655 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 SLC38A3Q99624 504 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 LINC00597Q9H2U6 94 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 MAGEE1Q9HCI5 957 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 MARCH5Q9NX47 278 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 K7EPI3 171 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 GNSP15586 552 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 ATF6P18850 670 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 GRIA2P42262 883 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 WDR4P57081 412 aaKnown RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 OCA2Q04671 838 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 IZUMO2Q6UXV1 221 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 SRFBP1Q8NEF9 429 aaKnown RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 NPAS2Q99743 824 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 PCBD2Q9H0N5 130 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 LMAN2LQ9H0V9 348 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 FANCEQ9HB96 536 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 ANAPC2Q9UJX6 822 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 COQ6Q9Y2Z9 468 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 FAM220BPB1ANY3 271 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 NUDT14O95848 222 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 GRIA3P42263 894 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 MANFP55145 182 aaKnown RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 SLC34A1Q06495 639 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 FGD3Q5JSP0 725 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 LPCAT2Q7L5N7 544 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 CLNKQ7Z7G1 428 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 STK32CQ86UX6 486 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 CDK20Q8IZL9 346 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 PYDC1Q8WXC3 89 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 PYCR2Q96C36 320 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 OSBPL6Q9BZF3 934 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 ARL8BQ9NVJ2 186 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 CORO2BQ9UQ03 480 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 MRPS33Q9Y291 106 aaKnown RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 PSAT1Q9Y617 370 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 POLR2AP24928 1970 aaKnown RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 TRIM38O00635 465 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 PIP5K1BO14986 540 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 SIN3BO75182 1162 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 ECI2O75521 394 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 CEBPBP17676 345 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 HERVK_113P63132 956 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 NIPAL4Q0D2K0 466 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 METTL21CQ5VZV1 264 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 C2CD4AQ8NCU7 369 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 MCCC1Q96RQ3 725 aaPredicted RBP7.3□□□□□ -1.24
SYNE1-213ENST00000448038 ERVK-6Q9BXR3 956 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 HCFC2Q9Y5Z7 792 aa7.3□□□□□ -1.24
SYNE1-213ENST00000448038 LOC101059915A0A1B0GWI6 518 aaPredicted RBP7.29□□□□□ -1.24
SYNE1-213ENST00000448038 KERAO60938 352 aa7.29□□□□□ -1.24
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms