RNA–Protein interactions for RNA: ENST00000437048.6

VPS53-204, Transcript of VPS53, GARP complex subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS53, Length 13,106 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-204ENST00000437048 PI4K2AQ9BTU6 479 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 MIOSQ9NXC5 875 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 DOLKQ9UPQ8 538 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 TCP10L2B9ZVM9 353 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 POMCP01189 267 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SSTR1P30872 391 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 GRB14Q14449 540 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 HMBOX1Q6NT76 420 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 DCLRE1AQ6PJP8 1040 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 UBR7Q8N806 425 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SLC7A13Q8TCU3 470 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 FBXO32Q969P5 355 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SLC4A9Q96Q91 983 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ZNF780BQ9Y6R6 833 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 COL1A2P08123 1366 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ADAM10O14672 748 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 CDK2P24941 298 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 GLRBP48167 497 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ERVK-8P63133 956 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 DDX39BQ13838 428 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 USP41Q3LFD5 358 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 TOMM5Q8N4H5 51 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ARL8BQ9NVJ2 186 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 WASF2Q9Y6W5 498 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 GABRDO14764 452 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 NDUFB10O96000 172 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 IFNA2P01563 188 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ACOT2P49753 483 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 VEGFCP49767 419 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 RAB5CP51148 216 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 AFF1P51825 1210 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 CLCA4Q14CN2 919 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 GXYLT1Q4G148 440 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 COLEC12Q5KU26 742 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 HID1Q8IV36 788 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SEZ6LQ9BYH1 1024 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 THG1LQ9NWX6 298 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 OAS3Q9Y6K5 1087 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 HTR3EA5X5Y0 456 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SLC33A1O00400 549 aaPredicted RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 ARHGEF15O94989 841 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 CD6P30203 668 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 TXNRD3Q86VQ6 643 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 OTUB2Q96DC9 234 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 MAGIXQ9H6Y5 334 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ELAC1Q9H777 363 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 GTF2A1LQ9UNN4 478 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 MYPNQ86TC9 1320 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 hCG_1818297A0A087WSY0 165 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 LRRN3E7EW58 273 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 PRRG1O14668 218 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ZNF14P17017 642 aaPredicted RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 RGS6P49758 472 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SMTNL2Q2TAL5 461 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 GCNT6Q5T4J0 391 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 STYK1Q6J9G0 422 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 METAP1DQ6UB28 335 aaPredicted RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 S100A7AQ86SG5 101 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ECHDC2Q86YB7 292 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ELMOD2Q8IZ81 293 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SNX18Q96RF0 628 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SEMA6BQ9H3T3 888 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 LRRN3Q9H3W5 708 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 LRTM1Q9HBL6 345 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 IFT46Q9NQC8 304 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 CNTN6Q9UQ52 1028 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 TRPV2Q9Y5S1 764 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 MAU2Q9Y6X3 613 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SLC3A1Q07837 685 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 PTPN20Q4JDL3 420 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 KLHDC10Q6PID8 442 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 FATE1Q969F0 183 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ZNF668Q96K58 619 aaPredicted RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 RAB9BQ9NP90 201 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 FAIMQ9NVQ4 179 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 KLQ9UEF7 1012 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 VWA7Q9Y334 891 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 VWDEQ8N2E2 1590 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 CAPN8A6NHC0 703 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 MID1O15344 667 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 CHKAP35790 457 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SLC25A3Q00325 362 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 RBBP4Q09028 425 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 GCNT7Q6ZNI0 430 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 MED30Q96HR3 178 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 UQCC2Q9BRT2 126 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SNX15Q9NRS6 342 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ZNHIT2Q9UHR6 403 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 WDR27A2RRH5 827 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 NUDT7P0C024 238 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 TXNP10599 105 aaKnown RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 DCDC1P59894 354 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 IFI44LQ53G44 452 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 SLC25A41Q8N5S1 370 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 DENND1AQ8TEH3 1009 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 STON2Q8WXE9 905 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ZBED6CLQ96FA7 236 aaPredicted RBP7.11□□□□□ -1.27
VPS53-204ENST00000437048 KATNBL1Q9H079 304 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 ITM2CQ9NQX7 267 aa7.11□□□□□ -1.27
VPS53-204ENST00000437048 DGKBQ9Y6T7 804 aa7.11□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms