RNA–Protein interactions for RNA: ENST00000433888.5

PTPN4-205, Transcript of protein tyrosine phosphatase, non-receptor type 4, human

TSL 3

Gene PTPN4, Length 954 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Nucleus .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN4-205	ENST00000433888	LRIF1	Q5T3J3	769 aa		3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888		Q6ZSR9	355 aa		3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888	FBXL16	Q8N461	479 aa		3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888	LINC00612	Q8N6U2	182 aa		3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888	ANKRD42	Q8N9B4	389 aa		3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888	PPP4R1	Q8TF05	950 aa		3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888	HTRA1	Q92743	480 aa		3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888	MBNL1	Q9NR56	388 aa	Known RBP	3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888	TRMT1	Q9NXH9	659 aa	Known RBP	3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888	B3GALT5	Q9Y2C3	310 aa		3.2	□□□□□ -1.9
PTPN4-205	ENST00000433888		A0A1W2PQF6	199 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	EIF3CL	B5ME19	914 aa	Known RBP	3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	NPHP1	O15259	732 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	WDHD1	O75717	1129 aa	Predicted RBP	3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	DNAH10OS	P0CZ25	163 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	ACADS	P16219	412 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	NKX2-1	P43699	371 aa	Predicted RBP	3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	ZBED6	P86452	979 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	SEPT14	Q6ZU15	432 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	ZNF534	Q76KX8	674 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	RSRC2	Q7L4I2	434 aa	Known RBP	3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	SLC16A9	Q7RTY1	509 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	TSPAN33	Q86UF1	283 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	CRYBG2	Q8N1P7	616 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	MYRIP	Q8NFW9	859 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	SEMA4D	Q92854	862 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	TRIM63	Q969Q1	353 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	TMEM143	Q96AN5	459 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	MAP7D2	Q96T17	732 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	RANGRF	Q9HD47	186 aa	Predicted RBP	3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	RNF186	Q9NXI6	227 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	CWC15	Q9P013	229 aa	Known RBP	3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	FBXW11	Q9UKB1	542 aa		3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	PRRC2A	P48634	2157 aa	Known RBP	3.19	□□□□□ -1.9
PTPN4-205	ENST00000433888	OR6C76	A6NM76	312 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	DAB1	O75553	588 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	TAS2R40	P59535	323 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	RALBP1	Q15311	655 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	TEAD2	Q15562	447 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	ZRSR2	Q15696	482 aa	Known RBP	3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	ADIPOQ	Q15848	244 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	CCNG2	Q16589	344 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	CYP4A22	Q5TCH4	519 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	ARHGEF16	Q5VV41	709 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	PSRC1	Q6PGN9	363 aa	Predicted RBP	3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	DENND5B	Q6ZUT9	1274 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	FASTKD5	Q7L8L6	764 aa	Known RBP	3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	CEP97	Q8IW35	865 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	GPALPP1	Q8IXQ4	340 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	LMNTD2	Q8IXW0	634 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	OLIG1	Q8TAK6	271 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	ST8SIA4	Q92187	359 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	SYT15	Q9BQS2	421 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	SEMA6A	Q9H2E6	1030 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	EPB41L5	Q9HCM4	733 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	LUZP4	Q9P127	313 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888	TP53TG3	Q9ULZ0	132 aa		3.18	□□□□□ -1.9
PTPN4-205	ENST00000433888		A8MU10	97 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888		J3QR06	171 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	MAP2K7	O14733	419 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	KHDRBS3	O75525	346 aa	Known RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	DUS4L	O95620	317 aa	Known RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	KRTAP1-4	P0C5Y4	121 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	CKMT2	P17540	419 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	LMOD3	Q0VAK6	560 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	TMEM115	Q12893	351 aa	Predicted RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	FRG1	Q14331	258 aa	Known RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	MVP	Q14764	893 aa	Known RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	FAM109B	Q6ICB4	259 aa	Predicted RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	KRTAP5-5	Q701N2	237 aa	Predicted RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	RNF168	Q8IYW5	571 aa	Predicted RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	L3MBTL4	Q8NA19	623 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	ZFAND2B	Q8WV99	257 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	INTS12	Q96CB8	462 aa	Known RBP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	OMA1	Q96E52	524 aa		3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	NOL12	Q9UGY1	213 aa	Known RBP eCLIP	3.17	□□□□□ -1.9
PTPN4-205	ENST00000433888	ZNF197	O14709	1029 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	SEC14L2	O76054	403 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	UBL4A	P11441	157 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	PPM1F	P49593	454 aa	Predicted RBP	3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	OLR1	P78380	273 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	CEBPZ	Q03701	1054 aa	Known RBP	3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	DPCR1	Q3MIW9	517 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	HSP90AB4P	Q58FF6	505 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	DCLK2	Q8N568	766 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	ZNF383	Q8NA42	475 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	OR2T11	Q8NH01	316 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	HPSE2	Q8WWQ2	592 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	PIP5K1A	Q99755	562 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	PIGQ	Q9BRB3	760 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	INTS9	Q9NV88	658 aa	Known RBP	3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	TAB2	Q9NYJ8	693 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	TSPYL4	Q9UJ04	414 aa		3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	AKAP8L	Q9ULX6	646 aa	Known RBP eCLIP	3.16	□□□□□ -1.9
PTPN4-205	ENST00000433888	CCDC196	A0A1B0GTZ2	297 aa		3.15	□□□□□ -1.91
PTPN4-205	ENST00000433888	MEX3A	A1L020	520 aa	Known RBP	3.15	□□□□□ -1.91
PTPN4-205	ENST00000433888	NPIPB15	A6NHN6	443 aa	Predicted RBP	3.15	□□□□□ -1.91
PTPN4-205	ENST00000433888	TMEM189-UBE2V1	I3L0A0	370 aa		3.15	□□□□□ -1.91
PTPN4-205	ENST00000433888	DNM1L	O00429	736 aa		3.15	□□□□□ -1.91
PTPN4-205	ENST00000433888	SMAD9	O15198	467 aa	Known RBP	3.15	□□□□□ -1.91

Retrieved 100 of 20,778 RNA–protein pairs in 17.6 ms