RNA–Protein interactions for RNA: ENST00000418501.5

USP54-203, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 2

Gene USP54, Length 4,370 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-203ENST00000418501 HNRNPLP14866 589 aaKnown RBP eCLIP8.26□□□□□ -1.09
USP54-203ENST00000418501 NUDT1P36639 197 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 INHBCP55103 352 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 LRRC32Q14392 662 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 TRIM68Q6AZZ1 485 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 TANGO2Q6ICL3 276 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 BNC2Q6ZN30 1099 aaPredicted RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 ETFBKMTQ8IXQ9 262 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 HM13Q8TCT9 377 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 DTD2Q96FN9 168 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 PRPF18Q99633 342 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 RAB11FIP5Q9BXF6 653 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 CXorf56Q9H5V9 222 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 MEAF6Q9HAF1 191 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 NOP53Q9NZM5 478 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 STON1Q9Y6Q2 735 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 DCXO43602 365 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 ULK1O75385 1050 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 EBLN1P0CF75 366 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 HOXB6P17509 224 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 HTR1BP28222 390 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 GKP32189 559 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 MMP12P39900 470 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 RPS21P63220 83 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 CAMK1Q14012 370 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 AASDHQ4L235 1098 aaPredicted RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 ZNF789Q5FWF6 425 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 ARTNQ5T4W7 220 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 CGB2Q6NT52 195 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 ZNF549Q6P9A3 640 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 LIPIQ6XZB0 460 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 PRR23BQ6ZRT6 265 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 NET1Q7Z628 596 aaPredicted RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 ALYREFQ86V81 257 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 CPSF7Q8N684 471 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 GPR26Q8NDV2 337 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 DNAJB8Q8NHS0 232 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 TWIST2Q8WVJ9 160 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 ATOH8Q96SQ7 321 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 GDF15Q99988 308 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 KXD1Q9BQD3 176 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 C1QTNF3Q9BXJ4 246 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 UNKQ9C0B0 810 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 SLC32A1Q9H598 525 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 CLEC4EQ9ULY5 219 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 G3BP2Q9UN86 482 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 GPR34Q9UPC5 381 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 A0A1W2PPC1 479 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 CLDN9O95484 217 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 SNRPB2P08579 225 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 C1SP09871 688 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 PIK3R1P27986 724 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 HYAL1Q12794 435 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 GRM2Q14416 872 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 MMAAQ8IVH4 418 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 PIANPQ8IYJ0 282 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 HDDC3Q8N4P3 179 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 CATSPER1Q8NEC5 780 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 FRS2Q8WU20 508 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 UBTD2Q8WUN7 234 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 FUBP1Q96AE4 644 aaKnown RBP8.26□□□□□ -1.09
USP54-203ENST00000418501 SH3KBP1Q96B97 665 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 HIC2Q96JB3 615 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 BIRC8Q96P09 236 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 DCLRE1BQ9H816 532 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 RMND5AQ9H871 391 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 TRIM39Q9HCM9 518 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 AHSPQ9NZD4 102 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 TRPS1Q9UHF7 1281 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 HEBP2Q9Y5Z4 205 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 KCNE2Q9Y6J6 123 aa8.26□□□□□ -1.09
USP54-203ENST00000418501 ZNF638Q14966 1978 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 CFLARO15519 480 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 KIF1CO43896 1103 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 CBX6O95503 412 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 GUCA1CO95843 209 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 RPS17P08708 135 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 TEAD1P28347 426 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 RPL3P39023 403 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 HALP42357 657 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ZXDBP98169 803 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 CAMK2GQ13555 558 aaPredicted RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 CST6Q15828 149 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 LSM12Q3MHD2 195 aaKnown RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 ATP13A5Q4VNC0 1218 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 UNC50Q53HI1 259 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 CTSL3PQ5NE16 218 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 CAPN13Q6MZZ7 669 aaPredicted RBP8.25□□□□□ -1.09
USP54-203ENST00000418501 TMEM220Q6QAJ8 160 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 Q6ZVL8 140 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 PDPRQ8NCN5 879 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 SHDQ96IW2 340 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 SORT1Q99523 831 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 SLC12A9Q9BXP2 914 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 CD244Q9BZW8 370 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 ABCG8Q9H221 673 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 C17orf113A0A1B0GUU1 675 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 KANSL1LA0AUZ9 987 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 OR1I1O60431 355 aa8.25□□□□□ -1.09
USP54-203ENST00000418501 GJB3O75712 270 aa8.25□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms