RNA–Protein interactions for RNA: ENST00000416769.2

LINC00339-202, long intergenic non-protein coding RNA 339, humanhuman

TSL 1 (best) BASIC

Gene LINC00339, Length 1,077 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00339-202ENST00000416769 CAPZBP47756 277 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 INSCQ1MX18 579 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 CRTC2Q53ET0 693 aaPredicted RBP12.66□□□□□ -0.38
LINC00339-202ENST00000416769 PRAMEF17Q5VTA0 474 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 CACHD1Q5VU97 1274 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 KAZNQ674X7 775 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 CAPRIN2Q6IMN6 1127 aaKnown RBP12.66□□□□□ -0.38
LINC00339-202ENST00000416769 PWWP2BQ6NUJ5 590 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 IRGCQ6NXR0 463 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 AADACL2Q6P093 401 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 FBXO38Q6PIJ6 1188 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 BBS12Q6ZW61 710 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 BZW1Q7L1Q6 419 aaKnown RBP12.66□□□□□ -0.38
LINC00339-202ENST00000416769 NDUFAF2Q8N183 169 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 KIF18AQ8NI77 898 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 TRAF3IP1Q8TDR0 691 aaPredicted RBP12.66□□□□□ -0.38
LINC00339-202ENST00000416769 MAIP1Q8WWC4 291 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 PPM1MQ96MI6 270 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 TRIB3Q96RU7 358 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 LDHAL6BQ9BYZ2 381 aaPredicted RBP12.66□□□□□ -0.38
LINC00339-202ENST00000416769 ACTL8Q9H568 366 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 LRRC4CQ9HCJ2 640 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 PKD2L2Q9NZM6 624 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 RNF14Q9UBS8 474 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 PLEKHB1Q9UF11 243 aaPredicted RBP12.66□□□□□ -0.38
LINC00339-202ENST00000416769 SPO11Q9Y5K1 396 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 ITPR2Q14571 2701 aa12.66□□□□□ -0.38
LINC00339-202ENST00000416769 ANKRD66B4E2M5 251 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 APOL1O14791 398 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 CHUKO15111 745 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 SLC25A14O95258 325 aaPredicted RBP12.65□□□□□ -0.38
LINC00339-202ENST00000416769 FGF5P12034 268 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 ZNF7P17097 686 aaPredicted RBP12.65□□□□□ -0.38
LINC00339-202ENST00000416769 XRCC1P18887 633 aaPredicted RBP12.65□□□□□ -0.38
LINC00339-202ENST00000416769 COL8A1P27658 744 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 NR2C2P49116 596 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 ADCY2Q08462 1091 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 LAMB3Q13751 1172 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 TUBB2AQ13885 445 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 PCSK7Q16549 785 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 LCN10Q6JVE6 187 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 FAM83HQ6ZRV2 1179 aaPredicted RBP12.65□□□□□ -0.38
LINC00339-202ENST00000416769 PRSS42Q7Z5A4 293 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 C11orf96Q7Z7L8 435 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 ATCAYQ86WG3 371 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 SLC13A5Q86YT5 568 aaPredicted RBP12.65□□□□□ -0.38
LINC00339-202ENST00000416769 TRIM48Q8IWZ4 208 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 PLD5Q8N7P1 536 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 ACTRT1Q8TDG2 376 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 COG1Q8WTW3 980 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 TSGA13Q96PP4 275 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 MLPHQ9BV36 600 aaPredicted RBP12.65□□□□□ -0.38
LINC00339-202ENST00000416769 TUBB2BQ9BVA1 445 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 HEMGNQ9BXL5 484 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 RMI1Q9H9A7 625 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 BPIFA1Q9NP55 256 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 LHX9Q9NQ69 397 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 ZNF711Q9Y462 761 aa12.65□□□□□ -0.38
LINC00339-202ENST00000416769 SEC16AO15027 2179 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 ARGFXA6NJG6 315 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 TTLL8A6PVC2 850 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 APOC4-APOC2K7ER74 178 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 AGFG2O95081 481 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 APOC2P02655 101 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 EBLN1P0CF75 366 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 SLC2A4P14672 509 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 BPIP17213 487 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 CCNCP24863 283 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 CLCNKAP51800 687 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 RPL26P61254 145 aaKnown RBP12.64□□□□□ -0.39
LINC00339-202ENST00000416769 KLF1Q13351 362 aaPredicted RBP12.64□□□□□ -0.39
LINC00339-202ENST00000416769 SEMA5AQ13591 1074 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 LLGL1Q15334 1064 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 DUS1LQ6P1R4 473 aaKnown RBP12.64□□□□□ -0.39
LINC00339-202ENST00000416769 NPNTQ6UXI9 565 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 MICALCLQ6ZW33 695 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 LRRC49Q8IUZ0 686 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 TTC30BQ8N4P2 665 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 TTC13Q8NBP0 860 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 SPATA22Q8NHS9 363 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 CPT1CQ8TCG5 803 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 KLHL6Q8WZ60 621 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 ZNF592Q92610 1267 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 GLYATL1Q969I3 302 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 NAP1L3Q99457 506 aaPredicted RBP12.64□□□□□ -0.39
LINC00339-202ENST00000416769 NRTNQ99748 197 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 UCK1Q9HA47 277 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 ZFYVE1Q9HBF4 777 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 TRIM39Q9HCM9 518 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 SLC40A1Q9NP59 571 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 PSMD13Q9UNM6 376 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 RPL26L1Q9UNX3 145 aaKnown RBP12.64□□□□□ -0.39
LINC00339-202ENST00000416769 PCDHB3Q9Y5E6 796 aa12.64□□□□□ -0.39
LINC00339-202ENST00000416769 OR5K4A6NMS3 321 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 F5H423 210 aaPredicted RBP12.63□□□□□ -0.39
LINC00339-202ENST00000416769 ZNF185O15231 689 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 FGGP02679 453 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 NELFEP18615 380 aaKnown RBP12.63□□□□□ -0.39
LINC00339-202ENST00000416769 PAFAH1B1P43034 410 aa12.63□□□□□ -0.39
LINC00339-202ENST00000416769 ARCN1P48444 511 aaKnown RBP12.63□□□□□ -0.39
Retrieved 100 of 20,778 RNA–protein pairs in 47.8 ms