RNA–Protein interactions for RNA: ENST00000415188.1

USP4-203, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 3 BASIC

Gene USP4, Length 1,454 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-203ENST00000415188 RUNX3Q13761 415 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 CCINQ13939 588 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 PFKFB4Q16877 469 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 GRAMD1BQ3KR37 738 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 DGKKQ5KSL6 1271 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 RNF219Q5W0B1 726 aaPredicted RBP14.63□□□□□ -0.07
USP4-203ENST00000415188 NCEH1Q6PIU2 408 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 PAQR3Q6TCH7 311 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 CYHR1Q6ZMK1 362 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 SPATA19Q7Z5L4 167 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 ST13P4Q8IZP2 240 aaPredicted RBP14.63□□□□□ -0.07
USP4-203ENST00000415188 RYBPQ8N488 228 aaPredicted RBP14.63□□□□□ -0.07
USP4-203ENST00000415188 SPEM1Q8N4L4 309 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 TTC30BQ8N4P2 665 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 CHCHD4Q8N4Q1 142 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 ARL14EPQ8N8R7 260 aaPredicted RBP14.63□□□□□ -0.07
USP4-203ENST00000415188 HJURPQ8NCD3 748 aaPredicted RBP14.63□□□□□ -0.07
USP4-203ENST00000415188 MDGA1Q8NFP4 955 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 TWIST2Q8WVJ9 160 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 TBRG4Q969Z0 631 aaKnown RBP eCLIP14.63□□□□□ -0.07
USP4-203ENST00000415188 CCT7Q99832 543 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 FAM126AQ9BYI3 521 aaPredicted RBP14.63□□□□□ -0.07
USP4-203ENST00000415188 MUC3BQ9H195 1237 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 MID1IP1Q9NPA3 183 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 NCDNQ9UBB6 729 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 TRMT6Q9UJA5 497 aaKnown RBP14.63□□□□□ -0.07
USP4-203ENST00000415188 RIMS3Q9UJD0 308 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 CNOT11Q9UKZ1 510 aaKnown RBP14.63□□□□□ -0.07
USP4-203ENST00000415188 RAB26Q9ULW5 256 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 SUFUQ9UMX1 484 aa14.63□□□□□ -0.07
USP4-203ENST00000415188 TRAV19A0A0A6YYK7 116 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 SOBPA7XYQ1 873 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 H0YJX3 145 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 CBX4O00257 560 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 STX7O15400 261 aaKnown RBP14.62□□□□□ -0.07
USP4-203ENST00000415188 DENRO43583 198 aaKnown RBP14.62□□□□□ -0.07
USP4-203ENST00000415188 AP1G1O43747 822 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 TMCC1O94876 653 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 ESR1P03372 595 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 CKMP06732 381 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 VCLP18206 1134 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 LBPP18428 481 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 GPX3P22352 226 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 PTGER3P43115 390 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 SH3BP2P78314 561 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 MS4A2Q01362 244 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 CLCQ05315 142 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 FOXM1Q08050 763 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 ZNF77Q15935 545 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 LPAL2Q16609 132 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 PPP1R3AQ16821 1122 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 PTPRNQ16849 979 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 NAIF1Q69YI7 327 aaPredicted RBP14.62□□□□□ -0.07
USP4-203ENST00000415188 CLEC6AQ6EIG7 209 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 OGFOD2Q6N063 350 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 TICAM1Q8IUC6 712 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 HOMEZQ8IX15 550 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 MIER2Q8N344 545 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 ZNF483Q8TF39 744 aaPredicted RBP14.62□□□□□ -0.07
USP4-203ENST00000415188 KCNJ9Q92806 393 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 EXT2Q93063 718 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 DCUN1D1Q96GG9 259 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 HOPXQ9BPY8 73 aaPredicted RBP14.62□□□□□ -0.07
USP4-203ENST00000415188 AKTIPQ9H8T0 292 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 TMEM181Q9P2C4 612 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 LHX3Q9UBR4 397 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 CD300AQ9UGN4 299 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 MED16Q9Y2X0 877 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 DNAJC15Q9Y5T4 150 aa14.62□□□□□ -0.07
USP4-203ENST00000415188 CHURC1-FNTBB4DL54 471 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 E7ENX8 843 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 K7ESF4 209 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 UBTFL6P0CB48 400 aaPredicted RBP14.61□□□□□ -0.07
USP4-203ENST00000415188 IDO1P14902 403 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 EEF1DP29692 281 aaKnown RBP14.61□□□□□ -0.07
USP4-203ENST00000415188 MC4RP32245 332 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 FNTBP49356 437 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 AP1S1P61966 158 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 ARF5P84085 180 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 TRAF2Q12933 501 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 SETMARQ53H47 684 aaPredicted RBP14.61□□□□□ -0.07
USP4-203ENST00000415188 CERS6Q6ZMG9 384 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 RPS27LQ71UM5 84 aaKnown RBP14.61□□□□□ -0.07
USP4-203ENST00000415188 MARVELD2Q8N4S9 558 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 GOLM1Q8NBJ4 401 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 SH3RF2Q8TEC5 729 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 NSMCE3Q96MG7 304 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 BIRC8Q96P09 236 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 GPR21Q99679 349 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 CCDC167Q9P0B6 97 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 PCDHB1Q9Y5F3 818 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 WNT6Q9Y6F9 365 aa14.61□□□□□ -0.07
USP4-203ENST00000415188 ZNF106Q9H2Y7 1883 aaKnown RBP14.6□□□□□ -0.07
USP4-203ENST00000415188 PIP5K1BO14986 540 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 FZD6O60353 706 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 CRCPO75575 148 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 CHEK2O96017 543 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 ALDOCP09972 364 aaKnown RBP14.6□□□□□ -0.07
USP4-203ENST00000415188 PAX7P23759 505 aa14.6□□□□□ -0.07
USP4-203ENST00000415188 MAPK8P45983 427 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms