RNA–Protein interactions for RNA: ENST00000414632.5

VPS41-205, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 4

Gene VPS41, Length 548 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-205ENST00000414632 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 PRR5-ARHGAP8B1AHC4 643 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 KCNK1O00180 336 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 CDX4O14627 284 aaPredicted RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 APOL1O14791 398 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 RAD51BO15315 384 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 PJA2O43164 708 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 PSTPIP1O43586 416 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 NRP2O60462 931 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 POP4O95707 220 aaKnown RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 FTCDO95954 541 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 PEX11BO96011 259 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 HLA-DQB2P05538 268 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 PECAM1P16284 738 aaPredicted RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 CTPS1P17812 591 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 SPINK2P20155 84 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 CD27P26842 260 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 GARSP41250 739 aaKnown RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 SLC1A1P43005 524 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 MMP13P45452 471 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 CCR5P51681 352 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 MAP2K6P52564 334 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 ZNF135P52742 658 aaPredicted RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 HADHBP55084 474 aaKnown RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 CLDN2P57739 230 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 ARHGAP8P85298 464 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 RAD51Q06609 339 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 GALNT2Q10471 571 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 AP1B1Q10567 949 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 TRAF2Q12933 501 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 PAFAH1B3Q15102 231 aaKnown RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 NOMO1Q15155 1222 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 KIF19Q2TAC6 998 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 HLA-BQ31612 363 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 CCDC157Q569K6 752 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 ZNF805Q5CZA5 627 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 CFAP58Q5T655 872 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 DENND2CQ68D51 928 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 C11orf63Q6NUN7 778 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 SPOCD1Q6ZMY3 1216 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 TTC7BQ86TV6 843 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 PRPF39Q86UA1 669 aaKnown RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 ZC3H18Q86VM9 953 aaKnown RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 MAP7D3Q8IWC1 876 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 KRT78Q8N1N4 520 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 PLD5Q8N7P1 536 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 DTX3Q8N9I9 347 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 DEFB124Q8NES8 71 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 CEP76Q8TAP6 659 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 CASKIN2Q8WXE0 1202 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 LRTOMTQ8WZ04 291 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 DNASE2BQ8WZ79 361 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 FAM131CQ96AQ9 280 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 FAF2Q96CS3 445 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 CAMK1GQ96NX5 476 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 LGMNQ99538 433 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 HERPUD2Q9BSE4 406 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 HEMGNQ9BXL5 484 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 MAK16Q9BXY0 300 aaKnown RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 C10orf88Q9H8K7 445 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 NOD2Q9HC29 1040 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 DONSONQ9NYP3 566 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 RCOR3Q9P2K3 495 aaPredicted RBP4.89□□□□□ -1.63
VPS41-205ENST00000414632 LCMT1Q9UIC8 334 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 FADS3Q9Y5Q0 445 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 SPEGQ15772 3267 aa4.89□□□□□ -1.63
VPS41-205ENST00000414632 KNL1Q8NG31 2342 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 ZFC3H1O60293 1989 aaKnown RBP4.88□□□□□ -1.63
VPS41-205ENST00000414632 hCG_1818297A0A087WSY0 165 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 A0A088AWK7 358 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 A0A0A6YYK5 440 aaPredicted RBP4.88□□□□□ -1.63
VPS41-205ENST00000414632 SLC30A4O14863 429 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 SLC7A4O43246 635 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 LATO43561 262 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 SH3BP5O60239 455 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 CST8O60676 142 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 SDC3O75056 442 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 NEBLO76041 1014 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 SEC24DO94855 1032 aaPredicted RBP4.88□□□□□ -1.63
VPS41-205ENST00000414632 PAK4O96013 591 aaPredicted RBP4.88□□□□□ -1.63
VPS41-205ENST00000414632 JCHAINP01591 159 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 FURINP09958 794 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 CD38P28907 300 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 SERPINA4P29622 427 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 HOXD12P35452 270 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 PIK3CBP42338 1070 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 DPP6P42658 865 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 CDKN2BP42772 138 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 GLRBP48167 497 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 CD97P48960 835 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 AFF3P51826 1226 aaKnown RBP4.88□□□□□ -1.63
VPS41-205ENST00000414632 NRG3P56975 720 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 C21orf59P57076 290 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 GSDMDP57764 484 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 YBX1P67809 324 aaKnown RBP4.88□□□□□ -1.63
VPS41-205ENST00000414632 IL13RA1P78552 427 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 CCZ1BP86790 482 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 CCZ1P86791 482 aaPredicted RBP4.88□□□□□ -1.63
VPS41-205ENST00000414632 CD83Q01151 205 aa4.88□□□□□ -1.63
VPS41-205ENST00000414632 BCL2L1Q07817 233 aa4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 27.6 ms