RNA–Protein interactions for RNA: ENST00000401394.5

CTCF-202, Transcript of CCCTC-binding factor, humanhuman

TSL 1 (best) BASIC

Gene CTCF, Length 2,978 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-202ENST00000401394 KIAA1191Q96A73 305 aa20.71■□□□□ 0.91
CTCF-202ENST00000401394 SOBPA7XYQ1 873 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 GNGT2O14610 69 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 KERAO60938 352 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 FCGR1AP12314 374 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 OXCT1P55809 520 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 GRSF1Q12849 480 aaKnown RBP eCLIP20.7■□□□□ 0.9
CTCF-202ENST00000401394 ABRAXAS2Q15018 415 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 PDCD4Q53EL6 469 aaKnown RBP20.7■□□□□ 0.9
CTCF-202ENST00000401394 PAGE2BQ5JRK9 111 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 HID1Q8IV36 788 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 MDGA1Q8NFP4 955 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 HPS1Q92902 700 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 RMDN1Q96DB5 314 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 MTFMTQ96DP5 389 aaKnown RBP20.7■□□□□ 0.9
CTCF-202ENST00000401394 RPRD1AQ96P16 312 aaPredicted RBP20.7■□□□□ 0.9
CTCF-202ENST00000401394 GMIPQ9P107 970 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 GPR182O15218 404 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 EPHA2P29317 976 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 ZDHHC13Q8IUH4 622 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 C8orf59Q8N0T1 100 aaPredicted RBP20.7■□□□□ 0.9
CTCF-202ENST00000401394 OSCP1Q8WVF1 389 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 TRUB1Q8WWH5 349 aaKnown RBP20.7■□□□□ 0.9
CTCF-202ENST00000401394 SCN4AP35499 1836 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 LOC285095A0A1B0GVY8 99 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 FTH1P02794 183 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 RPS17P08708 135 aaKnown RBP20.7■□□□□ 0.9
CTCF-202ENST00000401394 GSSP48637 474 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 TMBIM6P55061 237 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 NR6A1Q15406 480 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 CTF1Q16619 201 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 XKR7Q5GH72 579 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 MRNIPQ6NTE8 343 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 SLCO6A1Q86UG4 719 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 EFHBQ8N7U6 833 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 OR7D4Q8NG98 312 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 PPP1R14BQ96C90 147 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 CGREF1Q99674 301 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 VNN3Q9NY84 501 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 ADGRE2Q9UHX3 823 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 PDE10AQ9Y233 779 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 PMF1-BGLAPU3KQ54 211 aa20.7■□□□□ 0.9
CTCF-202ENST00000401394 FNDC1Q4ZHG4 1894 aaPredicted RBP20.69■□□□□ 0.9
CTCF-202ENST00000401394 ESRRBO95718 433 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 NKX2-5P52952 324 aaPredicted RBP20.69■□□□□ 0.9
CTCF-202ENST00000401394 NCS1P62166 190 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 INAVAQ3KP66 663 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 ADPRMQ3LIE5 342 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 BRMS1LQ5PSV4 323 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 ANKRD46Q86W74 232 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 SPATA2LQ8IUW3 424 aaPredicted RBP20.69■□□□□ 0.9
CTCF-202ENST00000401394 METTL6Q8TCB7 284 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 LINGO1Q96FE5 620 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 PKMYT1Q99640 499 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 ERVK-18Q9QC07 812 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 PCDHGC4Q9Y5F7 938 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 AGRPO00253 132 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 E2F3O00716 465 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 JRKO75564 520 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 RPP40O75818 363 aaKnown RBP20.69■□□□□ 0.9
CTCF-202ENST00000401394 CDH1P12830 882 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 OR1E1P30953 314 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 ARPP19P56211 112 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 LGI2Q8N0V4 545 aa20.69■□□□□ 0.9
CTCF-202ENST00000401394 TFB2MQ9H5Q4 396 aaKnown RBP20.69■□□□□ 0.9
CTCF-202ENST00000401394 UPK3BL1B0FP48 263 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 UPK3BL2E5RIL1 263 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 TSPAN12O95859 305 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 HTR1EP28566 365 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 CHRNB3Q05901 458 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 CATSPEREQ5SY80 951 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 IRAK1BP1Q5VVH5 260 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 CYP20A1Q6UW02 462 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 ZFAND4Q86XD8 727 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 ZNF683Q8IZ20 524 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 Q8N9G6 341 aaPredicted RBP20.68■□□□□ 0.9
CTCF-202ENST00000401394 ATAD1Q8NBU5 361 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 FEM1AQ9BSK4 669 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 ZYG11BQ9C0D3 744 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 SLC30A1Q9Y6M5 507 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 C17orf102A2RUQ5 167 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 MOXD2PA6NHM9 499 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 TLR5O60602 858 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 TBX4P57082 545 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 EEFSECP57772 596 aaKnown RBP20.68■□□□□ 0.9
CTCF-202ENST00000401394 ERVK-8P63133 956 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 PRKG2Q13237 762 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 C1QTNF12Q5T7M4 302 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 MSANTD2Q6P1R3 559 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 GCNT7Q6ZNI0 430 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 GPRIN3Q6ZVF9 776 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 ZNF513Q8N8E2 541 aaPredicted RBP20.68■□□□□ 0.9
CTCF-202ENST00000401394 ACBD6Q9BR61 282 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 SPON2Q9BUD6 331 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 MTRRQ9UBK8 725 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 FKBPLQ9UIM3 349 aa20.68■□□□□ 0.9
CTCF-202ENST00000401394 ENO2P09104 434 aaPredicted RBP20.67■□□□□ 0.9
CTCF-202ENST00000401394 JAK1P23458 1154 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 TTKP33981 857 aa20.67■□□□□ 0.9
CTCF-202ENST00000401394 CA5AP35218 305 aa20.67■□□□□ 0.9
Retrieved 100 of 20,778 RNA–protein pairs in 26.2 ms