RNA–Protein interactions for RNA: ENST00000400301.5

USP48-204, Transcript of ubiquitin specific peptidase 48, humanhuman

TSL 1 (best) BASIC

Gene USP48, Length 4,309 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP48-204ENST00000400301 OAZ2O95190 189 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 KCNA5P22460 613 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 IDH2P48735 452 aaKnown RBP18.28■□□□□ 0.52
USP48-204ENST00000400301 NUDT18Q6ZVK8 323 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 DNAJB7Q7Z6W7 309 aaPredicted RBP18.28■□□□□ 0.52
USP48-204ENST00000400301 ERLEC1Q96DZ1 483 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 DNAJC11Q9NVH1 559 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 PRORSD1PA6NEY8 169 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 PRSS56P0CW18 603 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 SERPINB1P30740 379 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 RRM2P31350 389 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 TGFBIQ15582 683 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 XKR4Q5GH76 650 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 INTS11Q5TA45 600 aaKnown RBP18.28■□□□□ 0.52
USP48-204ENST00000400301 ARMC3Q5W041 872 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 PNPT1Q8TCS8 783 aaKnown RBP18.28■□□□□ 0.52
USP48-204ENST00000400301 CGREF1Q99674 301 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 ZIM2Q9NZV7 527 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 CD84Q9UIB8 345 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 YIPF1Q9Y548 306 aa18.28■□□□□ 0.52
USP48-204ENST00000400301 K7EPI3 171 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 INHAP05111 366 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 GDF5P43026 501 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 ATP4BP51164 291 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 SH3BP2P78314 561 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 DEFB115Q30KQ5 88 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 SNX20Q7Z614 316 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 RHEBL1Q8TAI7 183 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 PEX13Q92968 403 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 REXO5Q96IC2 774 aaKnown RBP18.27■□□□□ 0.52
USP48-204ENST00000400301 POPDC3Q9HBV1 291 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 C1orf109Q9NX04 203 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 TDRKHQ9Y2W6 561 aaKnown RBP18.27■□□□□ 0.52
USP48-204ENST00000400301 NEDD8-MDP1E9PL57 170 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 CNOT3O75175 753 aaKnown RBP18.27■□□□□ 0.52
USP48-204ENST00000400301 SEMA3BQ13214 749 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 C17orf99Q6UX52 265 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 CHSY3Q70JA7 882 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 CLEC14AQ86T13 490 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 TBC1D19Q8N5T2 526 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 OR4F6Q8NGB9 312 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 REPS1Q96D71 796 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 RAD21L1Q9H4I0 556 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 NSUN3Q9H649 340 aaKnown RBP18.27■□□□□ 0.52
USP48-204ENST00000400301 TIMMDC1Q9NPL8 285 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 KCNE2Q9Y6J6 123 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 SIM2Q14190 667 aaPredicted RBP18.27■□□□□ 0.52
USP48-204ENST00000400301 OR4D1Q15615 310 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 RFX4Q33E94 735 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 C11orf74Q86VG3 221 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 CACUL1Q86Y37 369 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 MARVELD2Q8N4S9 558 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 NAT16Q8N8M0 369 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 ASZ1Q8WWH4 475 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 OSGEPL1Q9H4B0 414 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 CIDEBQ9UHD4 219 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 PAIP2BQ9ULR5 123 aaKnown RBP18.27■□□□□ 0.52
USP48-204ENST00000400301 DUSP12Q9UNI6 340 aa18.27■□□□□ 0.52
USP48-204ENST00000400301 QSER1Q2KHR3 1735 aa18.27■□□□□ 0.51
USP48-204ENST00000400301 LRRC73Q5JTD7 316 aa18.27■□□□□ 0.51
USP48-204ENST00000400301 FBXL19Q6PCT2 694 aa18.27■□□□□ 0.51
USP48-204ENST00000400301 GALNT5Q7Z7M9 940 aa18.27■□□□□ 0.51
USP48-204ENST00000400301 OR7A2PQ8NGA2 310 aa18.27■□□□□ 0.51
USP48-204ENST00000400301 CLP1Q92989 425 aaKnown RBP18.27■□□□□ 0.51
USP48-204ENST00000400301 TREX1Q9NSU2 369 aa18.27■□□□□ 0.51
USP48-204ENST00000400301 FDXRP22570 491 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 NSG1P42857 185 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 RUNX1T1Q06455 604 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 ITGADQ13349 1161 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 TXNDC8Q6A555 127 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 COL4A5P29400 1685 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 STX16O14662 325 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 HTRA2O43464 458 aaPredicted RBP18.26■□□□□ 0.51
USP48-204ENST00000400301 ZBTB11O95625 1053 aaPredicted RBP18.26■□□□□ 0.51
USP48-204ENST00000400301 OCM2P0CE71 109 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 OCMP0CE72 109 aaPredicted RBP18.26■□□□□ 0.51
USP48-204ENST00000400301 RAP2AP10114 183 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 G6PDP11413 515 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 AQP1P29972 269 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 PCYT1AP49585 367 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 CREB5Q02930 508 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 CYP4F3Q08477 520 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 HM13Q8TCT9 377 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 KCNJ9Q92806 393 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 OTUB1Q96FW1 271 aaPredicted RBP18.26■□□□□ 0.51
USP48-204ENST00000400301 NSMCE3Q96MG7 304 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 AHSPQ9NZD4 102 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 ARVCFO00192 962 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 RPS14P62263 151 aaKnown RBP18.26■□□□□ 0.51
USP48-204ENST00000400301 FOXM1Q08050 763 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 INO80DQ53TQ3 878 aaPredicted RBP18.26■□□□□ 0.51
USP48-204ENST00000400301 PGM2L1Q6PCE3 622 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 SLC15A3Q8IY34 581 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 PACRGLQ8N7B6 248 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 ZNF540Q8NDQ6 660 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 DAPK2Q9UIK4 370 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 ZNF510Q9Y2H8 683 aa18.26■□□□□ 0.51
USP48-204ENST00000400301 SCELO95171 688 aa18.25■□□□□ 0.51
USP48-204ENST00000400301 CCNYL2Q5T2Q4 361 aa18.25■□□□□ 0.51
USP48-204ENST00000400301 OTUD1Q5VV17 481 aaPredicted RBP18.25■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 28.1 ms