RNA–Protein interactions for RNA: ENST00000392004.7

COL6A3-205, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 1 (best) BASIC

Gene COL6A3, Length 4,037 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-205ENST00000392004 TYROBPO43914 113 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 CD68P34810 354 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ARRB1P49407 418 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 LIN52Q52LA3 116 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 RBM20Q5T481 1227 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ARMC3Q5W041 872 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 CXorf57Q6NSI4 855 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 PARS2Q7L3T8 475 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 TMEM174Q8WUU8 243 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ASZ1Q8WWH4 475 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 LCN9Q8WX39 176 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 FAM126AQ9BYI3 521 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 SLC17A9Q9BYT1 436 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ATXN10Q9UBB4 475 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 RAD51BO15315 384 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 FTH1P02794 183 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 VIPR1P32241 457 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 SRSF5Q13243 272 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 KLF1Q13351 362 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 AP5B1Q2VPB7 878 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 FBXO43Q4G163 708 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ATP13A5Q4VNC0 1218 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 INO80DQ53TQ3 878 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 GRTP1Q5TC63 336 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 NET1Q7Z628 596 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 TMEM150AQ86TG1 271 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 LCA5Q86VQ0 697 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 CDYL2Q8N8U2 506 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 OR2T3Q8NH03 318 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 PTCD3Q96EY7 689 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ZNF599Q96NL3 588 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 SLC2A11Q9BYW1 496 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 MRPL40Q9NQ50 206 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 CLEC1BQ9P126 229 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 H0Y8X5 98 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 CACNG1Q06432 222 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 CAPRIN1Q14444 709 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 HIST2H2ACQ16777 129 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 HIST2H2AA3Q6FI13 130 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 ASTLQ6HA08 431 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 PAQR3Q6TCH7 311 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 DNAJC14Q6Y2X3 702 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 LPCAT2Q7L5N7 544 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 OR2A12Q8NGT7 310 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 PGAP3Q96FM1 320 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 BOCQ9BWV1 1114 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 TDRD1Q9BXT4 1180 aaKnown RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 WWP1Q9H0M0 922 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 COPS7BQ9H9Q2 264 aaPredicted RBP10.17□□□□□ -0.78
COL6A3-205ENST00000392004 SLC17A7Q9P2U7 560 aa10.17□□□□□ -0.78
COL6A3-205ENST00000392004 AKAP10O43572 662 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 THEGLP0DJG4 465 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 CDH3P22223 829 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 NR6A1Q15406 480 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 TAF1AQ15573 450 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 TSNQ15631 228 aaKnown RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 OTUD1Q5VV17 481 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 FSTL4Q6MZW2 842 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 ACAD11Q709F0 780 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 MILR1Q7Z6M3 343 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 GATAD2AQ86YP4 633 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 OR4E2Q8NGC2 313 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 NCSTNQ92542 709 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 LRRC39Q96DD0 335 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 IMP4Q96G21 291 aaKnown RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 LMLNQ96KR4 655 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 MAP10Q9P2G4 905 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 A0A0J9YYE9 177 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 MAGEC1O60732 1142 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 GLRA3O75311 464 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 FKBP6O75344 327 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 MYO1DO94832 1006 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 WDR47O94967 919 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 TRBC1P01850 177 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 JUNDP17535 347 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 IL1RL1Q01638 556 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 KIAA1211LQ6NV74 962 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 RIPOR1Q6ZS17 1223 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 TBC1D19Q8N5T2 526 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 NAT8LQ8N9F0 302 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 CCDC124Q96CT7 223 aaKnown RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 MOCOSQ96EN8 888 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 PKMYT1Q99640 499 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 SMOC1Q9H4F8 434 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 MARCH4Q9P2E8 410 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 OPTCQ9UBM4 332 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 RABGEF1Q9UJ41 708 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 BTRCQ9Y297 605 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 SEC23IPQ9Y6Y8 1000 aaKnown RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 PDGFBP01127 241 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 ABCB1P08183 1280 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 TPSB2P20231 275 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 AK4P27144 223 aaPredicted RBP10.16□□□□□ -0.78
COL6A3-205ENST00000392004 GCAP28676 217 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 HSPA7P48741 367 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 TPSAB1Q15661 275 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 LRRC36Q1X8D7 754 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 PHF19Q5T6S3 580 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 PSAPL1Q6NUJ1 521 aa10.16□□□□□ -0.78
COL6A3-205ENST00000392004 SUSD1Q6UWL2 747 aa10.16□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms