RNA–Protein interactions for RNA: ENST00000377348.6

VPS28-202, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS28, Length 1,097 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-202ENST00000377348 USP53Q70EK8 1073 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 B3GNT8Q7Z7M8 397 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 TMEM135Q86UB9 458 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 IGDCC3Q8IVU1 814 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 HM13Q8TCT9 377 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 GATA6Q92908 595 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 STAMBPL1Q96FJ0 436 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 GFM1Q96RP9 751 aaKnown RBP13.1□□□□□ -0.31
VPS28-202ENST00000377348 INSM2Q96T92 566 aaPredicted RBP13.1□□□□□ -0.31
VPS28-202ENST00000377348 TTC1Q99614 292 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 SLC38A3Q99624 504 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 CCM2Q9BSQ5 444 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 TMEM121BQ9BXQ6 578 aaPredicted RBP13.1□□□□□ -0.31
VPS28-202ENST00000377348 WWP1Q9H0M0 922 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 COG4Q9H9E3 785 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 RDH14Q9HBH5 336 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 WASH6PQ9NQA3 447 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 KCNK4Q9NYG8 393 aa13.1□□□□□ -0.31
VPS28-202ENST00000377348 IGHV1OR21-1A0A087WYE8 117 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 IQCF5A8MTL0 148 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 D6RAR5 112 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 AGRPO00253 132 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 TCEA3O75764 348 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 AP2A2O94973 939 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 VIPP01282 170 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 PAMP19021 973 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 CD1CP29017 333 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 PDHA2P29803 388 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 HALP42357 657 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 GPR3P46089 330 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 PREPP48147 710 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 PPM1FP49593 454 aaPredicted RBP13.09□□□□□ -0.31
VPS28-202ENST00000377348 TTPAP49638 278 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 CKAP4Q07065 602 aaKnown RBP13.09□□□□□ -0.31
VPS28-202ENST00000377348 BRD3Q15059 726 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 RPE65Q16518 533 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 WHAMMP3Q1A5X7 153 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 ISXQ2M1V0 245 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 DNAJC21Q5F1R6 531 aaKnown RBP13.09□□□□□ -0.31
VPS28-202ENST00000377348 AARS2Q5JTZ9 985 aaKnown RBP13.09□□□□□ -0.31
VPS28-202ENST00000377348 MAATS1Q7Z4T9 603 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 TRIM48Q8IWZ4 208 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 UNC5BQ8IZJ1 945 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 GPR150Q8NGU9 434 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 WDR48Q8TAF3 677 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 LKAAEAR1Q8TD35 194 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 JPH3Q8WXH2 748 aaPredicted RBP13.09□□□□□ -0.31
VPS28-202ENST00000377348 CXorf40BQ96DE9 158 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 ATXN7L3BQ96GX2 97 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 RMDN2Q96LZ7 410 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 DEPDC7Q96QD5 511 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 NUDT22Q9BRQ3 303 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 WDR83Q9BRX9 315 aaKnown RBP13.09□□□□□ -0.31
VPS28-202ENST00000377348 ERP44Q9BS26 406 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 TBC1D10AQ9BXI6 508 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 FOXP3Q9BZS1 431 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 STN1Q9H668 368 aaKnown RBP13.09□□□□□ -0.31
VPS28-202ENST00000377348 IMP3Q9NV31 184 aaKnown RBP13.09□□□□□ -0.31
VPS28-202ENST00000377348 ENTPD2Q9Y5L3 495 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 MRFAP1Q9Y605 127 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 CELSR3Q9NYQ7 3312 aa13.09□□□□□ -0.31
VPS28-202ENST00000377348 UNC13CQ8NB66 2214 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 C17orf113A0A1B0GUU1 675 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 UBA6A0AVT1 1052 aaPredicted RBP13.08□□□□□ -0.32
VPS28-202ENST00000377348 TRABD2BA6NFA1 517 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 KIF2AO00139 706 aaPredicted RBP13.08□□□□□ -0.32
VPS28-202ENST00000377348 PRMT5O14744 637 aaPredicted RBP13.08□□□□□ -0.32
VPS28-202ENST00000377348 NDUFS3O75489 264 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 USP1O94782 785 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 SLC35G4P0C7Q5 338 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 OR56A5P0C7T3 313 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 PGAM1P18669 254 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 MPSTP25325 297 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 CSF2RBP32927 897 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 PPARGP37231 505 aaPredicted RBP13.08□□□□□ -0.32
VPS28-202ENST00000377348 MAPK9P45984 424 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 CFHR1Q03591 330 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 CRYMQ14894 314 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 MAP9Q49MG5 647 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 ZNF789Q5FWF6 425 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 ARMC3Q5W041 872 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 DUPD1Q68J44 220 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 MRNIPQ6NTE8 343 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 NEPROQ6NW34 567 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 UNQ6494/PRO21346Q6UXR6 183 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 DENND6AQ8IWF6 608 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 PDIK1LQ8N165 341 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 KRT222Q8N1A0 295 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 CACTIN-AS1Q8N1I8 211 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 ELMO1Q92556 727 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 C12orf66Q96MD2 445 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 EBNA1BP2Q99848 306 aaKnown RBP13.08□□□□□ -0.32
VPS28-202ENST00000377348 VPS37BQ9H9H4 285 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 PLAC1Q9HBJ0 212 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 C20orf96Q9NUD7 363 aaPredicted RBP13.08□□□□□ -0.32
VPS28-202ENST00000377348 POT1Q9NUX5 634 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 TMEM9Q9P0T7 183 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 ACSL5Q9ULC5 683 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 CHMP2BQ9UQN3 213 aa13.08□□□□□ -0.32
VPS28-202ENST00000377348 A0A1W2PNU3 283 aaPredicted RBP13.07□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 71 ms