RNA–Protein interactions for RNA: ENST00000360579.11

VPS29-201, Transcript of VPS29, retromer complex component, humanhuman

TSL 1 (best) BASIC

Gene VPS29, Length 1,091 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-201ENST00000360579 SLC38A9Q8NBW4 561 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 KCTD6Q8NC69 237 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 GPR150Q8NGU9 434 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 ZFPM2Q8WW38 1151 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 CLIP3Q96DZ5 547 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 MOCOSQ96EN8 888 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 C19orf60Q96EN9 201 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 IP6K3Q96PC2 410 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 TRIB3Q96RU7 358 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 SYTL2Q9HCH5 934 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 ANO10Q9NW15 660 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 SOHLH2Q9NX45 425 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 BTRCQ9Y297 605 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 B3GNT3Q9Y2A9 372 aa13.52□□□□□ -0.25
VPS29-201ENST00000360579 DNMT3AQ9Y6K1 912 aaPredicted RBP13.52□□□□□ -0.25
VPS29-201ENST00000360579 MYO1FO00160 1098 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 PIRTP0C851 137 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 IFI35P80217 286 aaPredicted RBP13.51□□□□□ -0.25
VPS29-201ENST00000360579 CDK18Q07002 472 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 XRCC4Q13426 336 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 PLEKHN1Q494U1 663 aaPredicted RBP13.51□□□□□ -0.25
VPS29-201ENST00000360579 KHDC1Q4VXA5 237 aaKnown RBP13.51□□□□□ -0.25
VPS29-201ENST00000360579 LYPLAL1Q5VWZ2 237 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 ZDHHC20Q5W0Z9 365 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 ZBTB2Q8N680 514 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 BEND7Q8N7W2 519 aaPredicted RBP13.51□□□□□ -0.25
VPS29-201ENST00000360579 DTX3LQ8TDB6 740 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 TM9SF4Q92544 642 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 DPH2Q9BQC3 489 aaPredicted RBP13.51□□□□□ -0.25
VPS29-201ENST00000360579 KRTAP3-3Q9BYR6 98 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 KRTAP3-2Q9BYR7 98 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 CBX8Q9HC52 389 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 ASF1BQ9NVP2 202 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 PADI2Q9Y2J8 665 aa13.51□□□□□ -0.25
VPS29-201ENST00000360579 C9J4A7 227 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 KCNK1O00180 336 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 MAP3K7O43318 606 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 POP7O75817 140 aaKnown RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 IPO13O94829 963 aaKnown RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 IGHEP01854 428 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 MTHFD1P11586 935 aaKnown RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 RORAP35398 523 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 RIPPLY3P57055 190 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 GBE1Q04446 702 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 ADCY2Q08462 1091 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 PPIDQ08752 370 aaKnown RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 PRKAA1Q13131 559 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 ATP1A4Q13733 1029 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 NAA30Q147X3 362 aaPredicted RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 SLC14A2Q15849 920 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 ATP13A5Q4VNC0 1218 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 SASS6Q6UVJ0 657 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 IGFL3Q6UXB1 125 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 NT5DC3Q86UY8 548 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 SRRM1Q8IYB3 904 aaKnown RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 TTC30BQ8N4P2 665 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 CISD2Q8N5K1 135 aaKnown RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 CNTD1Q8N815 330 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 FAF2Q96CS3 445 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 IMP4Q96G21 291 aaKnown RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 BTBD6Q96KE9 485 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 FER1L6-AS2Q96M78 137 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 C17orf62Q9BQA9 187 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 DHRS4Q9BTZ2 278 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 ILKAPQ9H0C8 392 aaPredicted RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 IMP3Q9NV31 184 aaKnown RBP13.5□□□□□ -0.25
VPS29-201ENST00000360579 IGF2BP1Q9NZI8 577 aaKnown RBP eCLIP13.5□□□□□ -0.25
VPS29-201ENST00000360579 TMPRSS11EQ9UL52 423 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 PSMD13Q9UNM6 376 aa13.5□□□□□ -0.25
VPS29-201ENST00000360579 OTOGQ6ZRI0 2925 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 KLHL33A6NCF5 533 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 MATN2O00339 956 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 HNRNPRO43390 633 aaKnown RBP13.49□□□□□ -0.25
VPS29-201ENST00000360579 MSL3P1P0C860 447 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 CYP2A7P20853 494 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 HMGCLP35914 325 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 HADHAP40939 763 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 PER3P56645 1201 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 ZBTB17Q13105 803 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 NCF4Q15080 339 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 STX1AQ16623 288 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 KYNUQ16719 465 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 LDLRAP1Q5SW96 308 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 E4F1Q66K89 784 aaPredicted RBP13.49□□□□□ -0.25
VPS29-201ENST00000360579 FAM198BQ6UWH4 519 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 RBM43Q6ZSC3 357 aaKnown RBP13.49□□□□□ -0.25
VPS29-201ENST00000360579 SYTL1Q8IYJ3 562 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 CLEC1AQ8NC01 280 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 LRRN4Q8WUT4 740 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 SLC7A5P2Q9GIP4 190 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 THAP2Q9H0W7 228 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 SLC25A51Q9H1U9 297 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 TRABDQ9H4I3 376 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 ACTR5Q9H9F9 607 aaPredicted RBP13.49□□□□□ -0.25
VPS29-201ENST00000360579 AGPAT4Q9NRZ5 378 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 C1GALT1Q9NS00 363 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 RYDENQ9NUL5 291 aaKnown RBP13.49□□□□□ -0.25
VPS29-201ENST00000360579 PCMTD2Q9NV79 361 aa13.49□□□□□ -0.25
VPS29-201ENST00000360579 COPG1Q9Y678 874 aaKnown RBP13.49□□□□□ -0.25
VPS29-201ENST00000360579 FBN2P35556 2912 aa13.49□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms